Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18820 403 / 2e-145 RAB71, AtRABG3f, AtRab7B RAB GTPase homolog G3F (.1) AT1G49300 388 / 2e-139 ATRAB7, ATRABG3E ARABIDOPSIS RAB GTPASE HOMOLOG G3E, ARABIDOPSIS RAB GTPASE HOMOLOG 7, RAB GTPase homolog G3E (.1.2) AT1G52280 368 / 1e-131 AtRABG3d RAB GTPase homolog G3D (.1) AT3G16100 368 / 1e-131 AtRABG3c, AtRab7D RAB GTPase homolog G3C (.1) AT4G09720 318 / 6e-112 AtRABG3a RAB GTPase homolog G3A (.1.2.3.4) AT1G22740 309 / 2e-108 RAB75, RAB7, AtRABG3b RAB GTPase homolog G3B (.1) AT2G21880 278 / 3e-96 AtRab7A, AtRABG2 ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB GTPase homolog 7A (.1.2) AT5G39620 219 / 9e-73 AtRABG1 RAB GTPase homolog G1 (.1) AT2G33870 140 / 1e-41 ArRABA1h RAB GTPase homolog A1H (.1) AT1G28550 139 / 2e-41 AtRABA1i RAB GTPase homolog A1I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042328 [exp] 388 / 3e-139 AT3G18820 367 / 3e-131 RAB GTPase homolog G3F (.1) Lus10035872 [exp] 375 / 2e-134 AT1G52280 397 / 4e-143 RAB GTPase homolog G3D (.1) Lus10023582 [exp] 345 / 1e-122 AT3G18820 330 / 4e-117 RAB GTPase homolog G3F (.1) Lus10028719 [exp] 289 / 1e-100 AT4G09720 341 / 5e-121 RAB GTPase homolog G3A (.1.2.3.4) Lus10006059 [exp] 275 / 3e-95 AT4G09720 323 / 4e-114 RAB GTPase homolog G3A (.1.2.3.4) Lus10025790 [exp] 233 / 1e-78 AT1G52280 257 / 5e-88 RAB GTPase homolog G3D (.1) Lus10005443 [exp] 137 / 2e-40 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10015297 [exp] 135 / 2e-39 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 134 / 2e-39 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G115000 [exp] 416 / 2e-150 AT3G18820 408 / 2e-147 RAB GTPase homolog G3F (.1) Potri.004G153400 [exp] 415 / 3e-150 AT3G18820 405 / 2e-146 RAB GTPase homolog G3F (.1) Potri.003G053400 [exp] 357 / 5e-127 AT1G52280 395 / 2e-142 RAB GTPase homolog G3D (.1) Potri.001G182900 [exp] 352 / 2e-125 AT3G16100 394 / 7e-142 RAB GTPase homolog G3C (.1) Potri.002G062400 [exp] 321 / 3e-113 AT4G09720 375 / 1e-134 RAB GTPase homolog G3A (.1.2.3.4) Potri.005G198800 [exp] 312 / 1e-109 AT4G09720 370 / 2e-132 RAB GTPase homolog G3A (.1.2.3.4) Potri.005G085300 [exp] 285 / 9e-99 AT4G09720 291 / 3e-101 RAB GTPase homolog G3A (.1.2.3.4) Potri.007G079700 [exp] 233 / 1e-78 AT4G09720 272 / 3e-94 RAB GTPase homolog G3A (.1.2.3.4) Potri.003G086700 [exp] 138 / 6e-41 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.011G061300 [exp] 138 / 8e-41 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10040468 pacid=23173906 polypeptide=Lus10040468 locus=Lus10040468.g ID=Lus10040468.BGIv1.0 annot-version=v1.0 ATGCCTTCCCGTCGAAGAACCCTGCTGAAGGTCATCATACTCGGTGACAGCGGGGTGGGCAAGACTTCTTTGATGAATCAATATGTAAACAAGAAGTTCA GCAATCAGTACAAGGCAACAATTGGTGCCGATTTCTTGACAAAGGAAGTGCAGTTTGAAGATAGGCTCTTCACTCTACAGATCTGGGATACTGCTGGACA GGAAAGATTCCAAAGCCTTGGTGTTGCCTTCTATCGTGGCGCTGATTGCTGTGTTCTAGTCTATGATGTTAACTCGATGAAATCGTTTGACAATCTCAAT AACTGGAGGGAGGAGTTCCTAATCCAGGCAAGTCCTTCTGATCCTGAGAACTTTCCTTTCGTTGTTCTCGGAAACAAGATTGATGTTGATGGTGGAAACA GCAGAGTGGTTTCCGAGAAAAAGGCTCGAGCCTGGTGTGCATCCAAAGGCAATATCCCATACTTCGAGACCTCTGCAAAGGAAGGCATTAATGTAGAAGA AGCTTTCCAGGTCATAGCAAAGGATGCCTTGAAGACCGGAGAAGATGAAGAAATCTACTTGCCGGACACGATCGATGTGGGAAGCAGCAACCAGCCTAGG TCCAGTGGATGCGAATGCTAA
AA sequence Show only first row Show all	>Lus10040468 pacid=23173906 polypeptide=Lus10040468 locus=Lus10040468.g ID=Lus10040468.BGIv1.0 annot-version=v1.0 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN NWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQVIAKDALKTGEDEEIYLPDTIDVGSSNQPR SSGCEC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	0	1
AT4G37030			unknown protein		Lus10011021 [exp]	1.0	0.9374
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10023582 [exp]	2.0	0.9230
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	2.2	0.9168
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10034123 [exp]	2.4	0.9247
					Lus10025501 [exp]	3.2	0.9355
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041223 [exp]	4.5	0.9057
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10025176 [exp]	4.7	0.8877
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000353 [exp]	4.9	0.8871
AT5G65960			GTP binding (.1)		Lus10016687 [exp]	5.0	0.8866
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	5.7	0.8933

Compare expression of checked genes

Lus10040468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.