Plant FIBer expression Database

Lus10040469 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43250 550 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G124700
[exp]
677 / 0 AT2G43250 663 / 0.0 unknown protein
Potri.017G035700
[exp]
658 / 0 AT2G43250 726 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10040469 pacid=23174227 polypeptide=Lus10040469 locus=Lus10040469.g ID=Lus10040469.BGIv1.0 annot-version=v1.0
ATGGCACTTGCTTTCGTCTACATCCTACAAAACCTATGGCCGTTCTCGAATCTTCTCAAGTCTGACGATCTGAGAACTTCGGACGCTCTGGTTAACAAAC
TGTCGATTCCTGAACGGACGAAGAAGTTTGTTTACGCCGTCCACGATTCCAAGTCGGATTCCGTTATTTATATTCTGTCCGTGCAGAATTTGTCCGAGCG
ATCGGCTGAAGACGTGGGGTGTCTTATTAGGGAGGTTAAACCTCAAGCTGTGGTGGCTCAGGTTGGCAATTCGACGGTGGTTGAGGATCTCCTTGAAGAG
GATCGTTTGGCAGGTAATGGCTGTGACTTGGTTCCGACTTCGTTGTTTGGTGTGCTTAGGCAGTGTTTTGTTCACAAGATTGGTAAGGAGAAGTACGAGA
GTTTAGCGGGGAATTTGGTGTTGAGGGAGATATTTGGGGTAGGGTTTCATGGCCATGTTTGGACTGCTAATAGAGCTGCTAGAGAAGTCGGTTCTTCGTT
TTTAGCTCTTGAATCTCCGAGCATTGGTGCGATTGGTGGAAATGGTGGTGGGGACGAAGCTAGTGACAGGGTGAACATGGTTGAAGGTTTCGTTAGCAGT
AGCTTGATTGCTAAGGAAGCAGGCTCTATTGGTTCCTCTGGTTCGAGAAATTTTTCTCTTTGGAATGACGTTCGGTCGAAGATGGCAAAGGTGTTGCGTT
TAAACACCAATACTGTAGTGCCGAAGATGGAGGCGGGGTTGAGTGCGGTAAATCAAGTGAACATTTCTCAGGTGCCACCATTTGCGCATTCTATATTTCC
ATTACTTGTTGACTTGCGTAACATTTTCGCGGATCTCCCGTCACTTGGTAAGGCATTGGCATGTTCACAGAAGATGTTTTATGATATCCACAGAGGGGAA
AGTATGGATGCTGAAATTGTATCTGAAGTGTGCACATTCCGGGTTGCTGTTGAGGGATTAAGAATTGCACTGAACGATGCAGGTAGGGTTCCCATCAGAA
AATTGAGGCAACCCACTGAAATTGGAACGAACTTCTCGGAGCTTCCGGCTGAAGAGAAGTCAGAAGTACTCCTTGCACATGCCCTTCAGAGCCAGTGTGA
AAAATATAAGACCATAGTAGCTGTAGTAGATGCTAGTTCCTTGGTTGGTCTTAGGAAACACTGGAACACTCCTGTGCCTTCTAACATCAAAGATATAATC
AGCCAGCTTATTAAAGATTGCAAGTCCGACGGAGAACCTTCGAATCAGGATGAGAATAGATGGCCATTCTCCAACAAACCCGTGGTTGCAGTAGGTGCCG
GGGCAACAGCTGTTGTGGGAGCTTCATCTCTGTCCAAAGTCATTCCTTTATCGACTGTAGTAAAGGCGTCTACTTTCAAGCTCCCAGTTGCCTCTCTGAA
GCTTTTGTTCGGCCAATCCCAGAAAGCCATGGCATTTGCTTTTACCAAGAGTGGTCTGACTGCTAATACAGGGGCTCACGCAACGTCCATTATGAAGTCA
GCTGCCTCTGCAGAGAAAATCCGGACCGTGGCCCACGGCATCATAACATCGGCAGAAAGGACGAGCTTTTCGGCTATGAGAACGGCTTTTTATGAGATAA
TGAGGAAGAGAAGTGTCCGGCCTATCGGTTTTCTACCTTGGGCGACATTTGGAGGAAGTCTCATGACACTGTCGGGTTTGCTGTTGTGTAGCGATGGGAT
CGAATGTGTTGCCGAGTCTTTTCCTTCGGCCCCTGCAGTTGCAAGAATGGGTCGCGGTATCCAAAGCTTGAGGCTGGCATCTGAAGAAGTGAAGCAGACT
GACCGGAACAGAATTCAGAAGTCTATCGAATCGCTTATGTACAAACTTAAGGGAGTGACTTCGTAA
AA sequence
>Lus10040469 pacid=23174227 polypeptide=Lus10040469 locus=Lus10040469.g ID=Lus10040469.BGIv1.0 annot-version=v1.0
MALAFVYILQNLWPFSNLLKSDDLRTSDALVNKLSIPERTKKFVYAVHDSKSDSVIYILSVQNLSERSAEDVGCLIREVKPQAVVAQVGNSTVVEDLLEE
DRLAGNGCDLVPTSLFGVLRQCFVHKIGKEKYESLAGNLVLREIFGVGFHGHVWTANRAAREVGSSFLALESPSIGAIGGNGGGDEASDRVNMVEGFVSS
SLIAKEAGSIGSSGSRNFSLWNDVRSKMAKVLRLNTNTVVPKMEAGLSAVNQVNISQVPPFAHSIFPLLVDLRNIFADLPSLGKALACSQKMFYDIHRGE
SMDAEIVSEVCTFRVAVEGLRIALNDAGRVPIRKLRQPTEIGTNFSELPAEEKSEVLLAHALQSQCEKYKTIVAVVDASSLVGLRKHWNTPVPSNIKDII
SQLIKDCKSDGEPSNQDENRWPFSNKPVVAVGAGATAVVGASSLSKVIPLSTVVKASTFKLPVASLKLLFGQSQKAMAFAFTKSGLTANTGAHATSIMKS
AASAEKIRTVAHGIITSAERTSFSAMRTAFYEIMRKRSVRPIGFLPWATFGGSLMTLSGLLLCSDGIECVAESFPSAPAVARMGRGIQSLRLASEEVKQT
DRNRIQKSIESLMYKLKGVTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G43250 unknown protein Lus10040469
[exp]
0 1
AT3G06170 Serinc-domain containing serin... Lus10004430
[exp]
1.7 0.8602
AT3G02910 AIG2-like (avirulence induced ... Lus10040635
[exp]
3.2 0.8545
AT4G25570 ACYB-2 Cytochrome b561/ferric reducta... Lus10038866
[exp]
4.2 0.8491
AT4G25570 ACYB-2 Cytochrome b561/ferric reducta... Lus10014986
[exp]
4.7 0.8009
AT4G35220 Cyclase family protein (.1) Lus10014092
[exp]
5.9 0.8381
AT1G17100 SOUL heme-binding family prote... Lus10042093
[exp]
6.6 0.8404
AT5G15860 ICME, ATPCME Isoprenylcysteine methylestera... Lus10034083
[exp]
8.0 0.7620
AT5G10050 NAD(P)-binding Rossmann-fold s... Lus10004925
[exp]
9.8 0.7854
AT3G08690 ATUBC11, UBC11 ubiquitin-conjugating enzyme 1... Lus10028700
[exp]
10.2 0.8237
AT3G57990 unknown protein Lus10012013
[exp]
10.6 0.7873

Lus10040469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.