Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040635 [exp] 52 / 1e-08 AT3G02910 135 / 4e-41 AIG2-like (avirulence induced gene) family protein (.1) Lus10018276 [exp] 0 / 1 AT3G02910 142 / 4e-41 AIG2-like (avirulence induced gene) family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040471 pacid=23174194 polypeptide=Lus10040471 locus=Lus10040471.g ID=Lus10040471.BGIv1.0 annot-version=v1.0 ATGCGCCGCGGCGACGCTAAGGGAGAACAACCACCACCCGTCGCAGCCGGCGGCGGCTGTGATCTTCACATTCGGCACTCTAAAGAAGGGCTTCTCCAAC CACGGTTTGATGCAAGATCTGATGCAGACAGGAGACGCCGTCTTCCTCCGAGGAACCCACTTGTCTGCGGTCCTTTCAGCGTACCGTTCCCGGAGCGGAA GGAGCTAATCGAGTCTCAGGCGAACTGTACGCCGTCTCCGTCCGTGGCCTTGCCCGCCTGGATGAACTCGAAGGCACCGTCGCCGGCCATTACGAGCGGC TGCCGATGGAGGTGGAAGGCATCGGCGAAGTGGAGGCGTATTTCGCGGAGACGCGGTGGAAATGTGGGAGAGGTGTGGGAAGATTGGGCACTCGGTGTAC GGAGAGGAGGAATCGAAAGGGTACGTGAGGAGGAAAGACCGGCCGGTGAATTTGAGCTTCCTGGAGCAGATTCGGCTGTTCATCTCTTCCGGCAGCGAAT CCTGACTGACCTTTTCGATAGACGTTGGTCTAGGTCTGGCATAACCTGTGTGCTCTGCAGCTGCCTTCTGGTTAGGGACTGGGATGAGGACGAACAAGAC ATTAAAATCAAGGAACTCAGGTTGAGTAAGAGCGATTGTTACTATGACCTAGATGAGAGGACACCAGGATGGACAGAAATGGATTTCGGAGATGCTATAC AACAGTAA
AA sequence Show only first row Show all	>Lus10040471 pacid=23174194 polypeptide=Lus10040471 locus=Lus10040471.g ID=Lus10040471.BGIv1.0 annot-version=v1.0 MRRGDAKGEQPPPVAAGGGCDLHIRHSKEGLLQPRFDARSDADRRRRLPPRNPLVCGPFSVPFPERKELIESQANCTPSPSVALPAWMNSKAPSPAITSG CRWRWKASAKWRRISRRRGGNVGEVWEDWALGVRRGGIERVREEERPAGEFELPGADSAVHLFRQRILTDLFDRRWSRSGITCVLCSCLLVRDWDEDEQD IKIKELRLSKSDCYYDLDERTPGWTEMDFGDAIQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040471 [exp]	0	1
AT5G38790			unknown protein		Lus10003044 [exp]	6.6	0.7366
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	10.8	0.7233
AT1G16760			Protein kinase protein with ad...		Lus10008609 [exp]	13.3	0.7310
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	15.9	0.6892
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	17.5	0.6763
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008186 [exp]	17.7	0.6952
AT1G71970			unknown protein		Lus10017920 [exp]	18.5	0.6944
					Lus10007785 [exp]	24.5	0.6623
					Lus10016642 [exp]	28.3	0.6321
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	31.7	0.7053

Compare expression of checked genes

Lus10040471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.