Plant FIBer expression Database

Lus10040473 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10780 269 / 3e-93 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023585
[exp]
348 / 9e-125 AT5G10780 253 / 5e-87 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G266300
[exp]
333 / 1e-118 AT5G10780 269 / 2e-93 unknown protein
Potri.018G016800
[exp]
329 / 4e-117 AT5G10780 259 / 2e-89 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06417 DUF1077 Protein of unknown function (DUF1077)
Representative CDS sequence
>Lus10040473 pacid=23174113 polypeptide=Lus10040473 locus=Lus10040473.g ID=Lus10040473.BGIv1.0 annot-version=v1.0
ATGGACAAGGGAAAAGGAATTATGGGTTCGGGTCGCAGATGGGCTGTTGATTTCACTGACAATTCACTAGCCCCTTCGTCTCGTGACATCCCTGATCCTC
CCGGTTACTCTCGTGCCTCCCAAGATCAGGATGAATCTGCTGTATCAAAGCAAAAGAAGGATGCTGAAGCAAATTGGAAATCCCAGAAAGCATGGGAAGT
AGCACAAGCACCTTTCAAGAATTTGCTAATGATGGGGTTCATGATGTGGATGGCTGGGAATACAGTGCACCTTTTCAGCATTGGTATTACGTTTTCAGCT
CTTTGGCAACCCTTGAGCGCTCTACAAGGGGTTGGAAAGGTCTTTGAGCCATACAAGGACAGCAAAGTTGACCTTCTTACACCTAAGTTACTATACATTG
CCCTAAATCTAGGGGCCATGATCTTGGGGGTTTGGAAGCTTAACACATTGGGTCTACTTCCAACACATGCATCAGACTGGGTTTCAACTCTACCACCTGC
TCAGGAGGTTGAATACTCAGGTGGAGGGATTGCTTTGCATTGA
AA sequence
>Lus10040473 pacid=23174113 polypeptide=Lus10040473 locus=Lus10040473.g ID=Lus10040473.BGIv1.0 annot-version=v1.0
MDKGKGIMGSGRRWAVDFTDNSLAPSSRDIPDPPGYSRASQDQDESAVSKQKKDAEANWKSQKAWEVAQAPFKNLLMMGFMMWMAGNTVHLFSIGITFSA
LWQPLSALQGVGKVFEPYKDSKVDLLTPKLLYIALNLGAMILGVWKLNTLGLLPTHASDWVSTLPPAQEVEYSGGGIALH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G10780 unknown protein Lus10040473
[exp]
0 1
AT3G58800 unknown protein Lus10007354
[exp]
1.0 0.9114
AT3G20920 translocation protein-related ... Lus10009945
[exp]
2.0 0.8984
AT2G44360 unknown protein Lus10012711
[exp]
5.5 0.8434
AT1G09330 ECHIDNA, ECH unknown protein Lus10010063
[exp]
6.0 0.8611
AT5G11730 Core-2/I-branching beta-1,6-N-... Lus10007457
[exp]
6.7 0.8500
AT1G77370 Glutaredoxin family protein (.... Lus10028355
[exp]
6.7 0.8681
AT5G03460 unknown protein Lus10014419
[exp]
6.9 0.8883
AT1G09330 ECHIDNA, ECH unknown protein Lus10004514
[exp]
7.5 0.8589
AT4G25670 unknown protein Lus10038842
[exp]
7.7 0.8413
AT3G24315 ATSEC20 Sec20 family protein (.1) Lus10023717
[exp]
9.8 0.8712

Lus10040473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.