Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43600 1460 / 0 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) AT5G20960 1453 / 0 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) AT2G27150 1405 / 0 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) AT1G04580 1394 / 0 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1) AT4G34890 474 / 2e-144 ATXDH1 xanthine dehydrogenase 1 (.1) AT4G34900 459 / 8e-139 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1) AT1G02590 72 / 6e-15 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011279 [exp] 2081 / 0 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10019386 [exp] 1746 / 0 AT3G43600 1635 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10008429 [exp] 1499 / 0 AT3G43600 1652 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10013393 [exp] 1498 / 0 AT3G43600 1657 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10034306 [exp] 465 / 4e-141 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1) Lus10023586 [exp] 230 / 3e-69 AT3G43600 209 / 5e-63 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153600 [exp] 1578 / 0 AT3G43600 1741 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Potri.004G191300 [exp] 1546 / 0 AT2G27150 1678 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) Potri.009G054600 [exp] 483 / 1e-147 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02738 [flax] [poplar] Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase PF01315 [flax] [poplar] Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CL0233 [flax] [poplar] SufE_NifU PF03450 [flax] [poplar] CO_deh_flav_C CO dehydrogenase flavoprotein C-terminal domain CL0486 [flax] [poplar] Fer2 PF01799 [flax] [poplar] Fer2_2 [2Fe-2S] binding domain CL0077 [flax] [poplar] FAD_PCMH PF00941 [flax] [poplar] FAD_binding_5 FAD binding domain in molybdopterin dehydrogenase CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10040474 pacid=23174219 polypeptide=Lus10040474 locus=Lus10040474.g ID=Lus10040474.BGIv1.0 annot-version=v1.0 ATGGAAGTCATCAGATTTGCAGAACAACACAACAATAACAGCAGCAATAATACTCTAGTGTTTGCAATCAACAACAAGAGATTCGAACTGACCAACTTAG ACGACTCATCAACGACTCTGCTTCAATTCCTGCGTACCCAAACCAGCATCAAGAGTCCCAAGCTGGGCTGCGGAGAAGGTGGCTGCGGAGCTTGCGTTGT TCTGCTGTCCAAGTACGATTCCAAAGTCGAAAAAGTCGAAAGCTTTACGGTAAGCTCCTGCCTGACGTTGCTGGGGAGTGTTCATGGATGTTCAATCACA ACATCTGAAGGGATTGGCAACAGTAGGGACGGATTCCATGAAATCCACCGCAGGTTTGGTGGATTCCATGCCTCTCAGTGTGGATTCTGCACTCCTGGAA TGTGCATGTCGCTTTACGGAGTGCTTGTTGATAAAAACAACAATGGTGGTGGTGGTGAAAAGCTGATGACTGTAATTGAAGCTGAGAAGGCCATTGCAGG AAACCTCTGCAGGTGTACCGGATACAGACCGATTTTGGATGCTTGCAAGAGCTTTGCAGTTGATGTTGATATGGAAGATTTGGGTGCTAACTCATTCTGC AGATTACCGTCTTACAGTTCTGGTACTGGAGGAATTTGTAGTAGTGCTGCATTTCCTGAATTCCTGAAAATGCAGGGGAAATCGAACTCAGCTTCCGGCT CGTGGGTTGTTCCTCAATCTACCGAGGAGCTTCTGAGATTAATGAATGGAAATGTTAAGATGAAGCTAGTGGTTGGAAATACAGGAATTGGTTACTACAA GGAGGAATTAGATGATATCTATGACAGATACATTGACATCAGGTATGTTCCTGAGCTTTCGAGAATCAGTTATAACGATCCGAACGGTGGTGGGATCAAA TTCGGAGCAGCTGTAACGATTTCCAAAGCCATAACAGCTTTGAAGGCCTCATCAGGATCATGTGGAGTAGTGTACCGAAAGATAGCGGACCATATGGAGA AAATCGCGACCCGGTTCGTTCGAAACACCGGTAGCATAGGTGGGAATCTGGTAATGGCACAAAGGAAAGGGTTTCCTTCAGACATTGCTACTCTTCTTAT TGCAGCTGGCTCTTACGTTGAGATACTAACCGATTCGATCCTCAAAAGGCTGACATTGGAAGAGTTTCTTCAGGAAACTAGGCCACCGTTGGCTGATTCC GCATCCGTACTAATCAGTATCGAAATACCTAGCTCAAAATCTGCAGTGTTTGAAACGTATCGCGCTTCGCCAAGGCCTTTAGGGAATGCATTGGCTCATC TCAGCTCTGCTTTCATGGCAGAGATCGACGGTGGAGATGTGATCAGCTCGTGCCGATTGGCGTTCGGTGGGAATGGAATCAATCGTACGATTCGAGCTAG AAAGGCTGAGGATTTCTTGGCAGGCAAGAAAGTAACCGCTAGTGTTGTGTATGAAGCTATCAGACTTGTTAAACACAGTGTTGCAAAATCGAGTAGTTCG GATCCTGAATACAAGTCGAGCTTAGCTGTTGGTTTCGTTTTCGAATTCCTTAGCCCCTTGATCCTAATTAATGGGTTGGTAAATGAAGCTTGTGAGACAA GTTATCGCCTGTTATCATCCGGGAAGCAGATTTTTCAAGTGCACAGAGAGAACCGACCGGTGGGGGAGCCGGTTCGAAAATCGGAATCTCTAATTCAAGC GTCTGGTGAGGCAGTTTTTGTAGATGACATTCCTTCACCTGAAAATTGTTTATACGGAGCATTTGTGTGGAGCACCAAGCCTTTTGCTAGAGTGAAAGGA ATAGGTTTCGAGTCTAACCGGCTTCCAGATGGAGTTGTTGCTCTGATATCTTCGAAAGATATTCCAAAATGTGGCGAGAATTTGGGGTCGAAGACGATAT TCGGTACCGAAACTCTGTTTGCAGATAACGTCACGCATTGTGCTGGGGAACGCCTTGCTTTCGTGGTTGCAGATTCACAGAAAAAAGCTGACGCAGCAGC AAAGATGGTTGTTGTGGATTATGACACAGTGGGGATGGAACCGCCAATTCTGACTGTGGAGGATGCTGTTAAGAGATCCAGCTTCATCAGTGTTCCTCCG TTTCTGAAACCGGACGAAGTCGGTGATGTAACGACAGGATTTGCTGAAGCGGATTACAGAATCATCAATGCTCAGATGAAAGTGAATTCACAGTACTACT TCTATATGGAGACACAGACTGCTATGGCGGTACCAGATGAAGATAACTGCATGGTGGTTTATAGTTCAAGCCAATCCCCAGAGGCTGTTGGTGTCACCAT TGCAGGATGCCTTGATCTTCCTCAGCACAATGTACGTGTGATCACAAGAAGGGTTGGCGGTGGTTTTGGTGGAAAAGCCCTCAAATCTATACCTATAGCT ACATCATGCGCACTTGCAGCTCAACTTCTACACCGACCAGTTAGGACATACCTCAATCGCAAAACCGACATGATAATCTCCGGAGGCAGACATCCAATGA AGGTCACCTACACCGCAGGATTCAAATCCAATGGCAAAATCACAGCTCTGAAACTCGAAATCCTGATTGATGCCGGTATGTCACCGGATGTAAGCGCCAT CATTCCGGTCCACTTGGTAGCAGCACTCAAAAAGTACGACTGGGGCTCCCTATCGTTTGATATAAAGCTGTGCAAGACGAACCGGTCCAGCAAATCGACA ATGCGAGCTCCTGGTGCGGTCCAAGGAACTTTCATTGCGGATACAGTGATGGAAAATGTAGCATCGGCTCTTGGCATGGATGTGGATGATCTGAGAGCTG TGAACCTTCATTGTTACGACAGCCTCAAGCTGTTCTATCCGAGATGCTTCGGGGAACGTGATGAGTATACTCTGAGTAGTATTTGGGAGAGAGTAGCGGA ATCGTCGGAGTTTCACAGGAGGAGGGAAATGGTGGAGGGGTTTAACAGGGATAACTTGTGGAGGAAGAAAGGGATTTCGAGAGTGCCGATCGTTTTTGAA GCTGGGGCTACAACAACTCCAGGGCGGGTAAGCATCCTGAGCGATGGATCCATTGCCGTGGAAGTAGGAGGGATAGAACTGGGACAAGGTCTGTGGACAA AGGCCAAACAAATGGCTGCATTTTCCTTGAGTTCATTAATCAACTCTGATTCTCACTACAGTCTGCTGGAGAAGGTAAGGGTTACTCAAGCTGATACCTT ATCTCTGATACAAGGAGGATTCACCGGTGGGAGCACGAAATCCGAATCGACCTGCGAAGCGATCAGACTCTGCTGCAATGTTCTGGTTGAGAGATTGCTT CCTCTCAAGGAGAAGCTGCAGAAGGAAAATAATGGGTCGATTGTCAGATGGGAGATGCTCATTTCCCAGGCGTATAAATCTTCAGTGAACTTAAGTGCAA GCTCTCTTTATGTCCCTGACTTCAGCACCAATCATTACTTGAACTATGGAGCAGCAGCAAGCGAGGCAAGTCATAGATTAGTGGAGATAAATCTTCTCAC AGGCGAAACAACAATTCTGAGATCAGATCTAATATATGACTGCGGACAAAGCTTGAATCCCGCCGTCGACATGGGACAGATTGAAGGAGCTTTTGTTCAG GGGATCGGATTCTTCATGATGGAAGAGTACAACACGAATTCGGACGGATTGGTGACCACAGATAGTACCTGGACATACAAGATTCCGACCATCGACACCA TTCCCAAACAGTTCAATGTCGAAATCCTCAGCAGCGGACATCACCGGAATCGAGTTCTGTCTTCCAAAGCCTCGGGCGAGCCGCCCCTACTGTTGGCAGC ATCAGTTCACTGCGCCACAAGAGCAGCAATCAAAGAAGCCAGGAAACAGCTGCATTCGTGGGGAGGCCTCGACGACAGTGATTACGCAAACTTTCATCTC GATGCACCGGCCACCATGGCAGTTGTGAAGAAGTTCTGTGGGTTGAACAGTGTGGAGAGCTACTTGAAATGGAAATTACTCAACCATAAGTAA
AA sequence Show only first row Show all	>Lus10040474 pacid=23174219 polypeptide=Lus10040474 locus=Lus10040474.g ID=Lus10040474.BGIv1.0 annot-version=v1.0 MEVIRFAEQHNNNSSNNTLVFAINNKRFELTNLDDSSTTLLQFLRTQTSIKSPKLGCGEGGCGACVVLLSKYDSKVEKVESFTVSSCLTLLGSVHGCSIT TSEGIGNSRDGFHEIHRRFGGFHASQCGFCTPGMCMSLYGVLVDKNNNGGGGEKLMTVIEAEKAIAGNLCRCTGYRPILDACKSFAVDVDMEDLGANSFC RLPSYSSGTGGICSSAAFPEFLKMQGKSNSASGSWVVPQSTEELLRLMNGNVKMKLVVGNTGIGYYKEELDDIYDRYIDIRYVPELSRISYNDPNGGGIK FGAAVTISKAITALKASSGSCGVVYRKIADHMEKIATRFVRNTGSIGGNLVMAQRKGFPSDIATLLIAAGSYVEILTDSILKRLTLEEFLQETRPPLADS ASVLISIEIPSSKSAVFETYRASPRPLGNALAHLSSAFMAEIDGGDVISSCRLAFGGNGINRTIRARKAEDFLAGKKVTASVVYEAIRLVKHSVAKSSSS DPEYKSSLAVGFVFEFLSPLILINGLVNEACETSYRLLSSGKQIFQVHRENRPVGEPVRKSESLIQASGEAVFVDDIPSPENCLYGAFVWSTKPFARVKG IGFESNRLPDGVVALISSKDIPKCGENLGSKTIFGTETLFADNVTHCAGERLAFVVADSQKKADAAAKMVVVDYDTVGMEPPILTVEDAVKRSSFISVPP FLKPDEVGDVTTGFAEADYRIINAQMKVNSQYYFYMETQTAMAVPDEDNCMVVYSSSQSPEAVGVTIAGCLDLPQHNVRVITRRVGGGFGGKALKSIPIA TSCALAAQLLHRPVRTYLNRKTDMIISGGRHPMKVTYTAGFKSNGKITALKLEILIDAGMSPDVSAIIPVHLVAALKKYDWGSLSFDIKLCKTNRSSKST MRAPGAVQGTFIADTVMENVASALGMDVDDLRAVNLHCYDSLKLFYPRCFGERDEYTLSSIWERVAESSEFHRRREMVEGFNRDNLWRKKGISRVPIVFE AGATTTPGRVSILSDGSIAVEVGGIELGQGLWTKAKQMAAFSLSSLINSDSHYSLLEKVRVTQADTLSLIQGGFTGGSTKSESTCEAIRLCCNVLVERLL PLKEKLQKENNGSIVRWEMLISQAYKSSVNLSASSLYVPDFSTNHYLNYGAAASEASHRLVEINLLTGETTILRSDLIYDCGQSLNPAVDMGQIEGAFVQ GIGFFMMEEYNTNSDGLVTTDSTWTYKIPTIDTIPKQFNVEILSSGHHRNRVLSSKASGEPPLLLAASVHCATRAAIKEARKQLHSWGGLDDSDYANFHL DAPATMAVVKKFCGLNSVESYLKWKLLNHK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	0	1
AT3G18950			Transducin/WD40 repeat-like su...		Lus10023836 [exp]	2.0	0.9001
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10015240 [exp]	4.5	0.8822
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	4.9	0.8549
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	5.9	0.8688
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	6.2	0.8875
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	6.2	0.8881
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	9.7	0.8739
					Lus10037540 [exp]	9.8	0.8602
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	11.2	0.8727
AT2G21080			unknown protein		Lus10036448 [exp]	12.0	0.8568

Compare expression of checked genes

Lus10040474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.