Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49320 180 / 1e-55 ATUSPL1 unknown seed protein like 1 (.1) AT5G25610 124 / 3e-33 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G60390 97 / 1e-22 PG1 polygalacturonase 1 (.1) AT1G70370 97 / 1e-22 PG2 polygalacturonase 2 (.1.2) AT1G23760 93 / 3e-21 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011280 [exp] 316 / 4e-109 AT1G49320 167 / 9e-51 unknown seed protein like 1 (.1) Lus10042335 [exp] 282 / 2e-95 AT1G49320 184 / 6e-57 unknown seed protein like 1 (.1) Lus10026333 [exp] 207 / 5e-67 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10007011 [exp] 209 / 1e-66 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10032324 [exp] 205 / 2e-65 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10006667 [exp] 200 / 7e-63 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1) Lus10006665 [exp] 192 / 1e-59 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10003263 [exp] 125 / 6e-34 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 124 / 1e-32 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G153100 [exp] 243 / 6e-80 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114300 [exp] 241 / 3e-79 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114600 [exp] 215 / 4e-69 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1) Potri.006G243700 [exp] 143 / 2e-40 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 143 / 5e-40 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 130 / 3e-35 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 122 / 1e-32 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 120 / 6e-32 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 115 / 3e-30 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 115 / 3e-30 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [flax] [poplar] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Lus10040475 pacid=23174190 polypeptide=Lus10040475 locus=Lus10040475.g ID=Lus10040475.BGIv1.0 annot-version=v1.0 ATGGCGGCTCCTCAACTTTCTTCCTGGACGACAACTCTTCTTCTTTTGCTCCATCTCCTCACGGTTATAACAGGATCAGCCATTGAATCAGACCAGAACT TGTCGATCTTCTTCAAACCGGGCCAACTCAAACCCGGTTCCACCATGCCGATCAACTTCTCGAAAAAGCACCCTTCAAGCACCCCGCATTTCCTCTCGAA ACAGCAATCCGATTCGATCCCTTTCGCTTCGGCCCACCTCCCTTCCCTCCTCCAGCTCTTCTCCTTCTCCGCCGGGTCCCCTCAGGCCGGAGCGGTCGAG ACCACACTGTCATTGTGCGAGCTCGAACCCATGACCGGAGAGACCAAGTTCTGCGCGACCTCGCTCGAGTCGATGCTCGACTCCGTCCGGTCCACTTTCG GGTCGGAAACCAAACTGCTCAAGGCCCTAACCACTAACCAGCTGAAAAAATCGGATAAACCGATTTCTTCTTCTTCTTCCGTTCAGGACTATACGGTCCT GAAGGAACCTGAGGAAATCCTGACGAGGAAAGTGATGGGTTGTCACACCATGCCGTATCCTTATTTGGTCTACTTCTGCCATAGCCCCGGAGGCGAAACG AAGGTGTTCAAGGTTTTGTTGGGTGGTGGCCGAGAAGGCGAGGTTGTGGAAGCTGTCGCGGTCTGCCATATGGATACTTCGAAATGGGATCGGAATAATC CGTCTTTTCGAGTTCTGGGAATTGAGCCCGGAGAAGGTCCCGTTTGTCATTTTTTGCCCGAGTTTGATATAGTTTGGGCTGATTTGAGGGTTTGA
AA sequence Show only first row Show all	>Lus10040475 pacid=23174190 polypeptide=Lus10040475 locus=Lus10040475.g ID=Lus10040475.BGIv1.0 annot-version=v1.0 MAAPQLSSWTTTLLLLLHLLTVITGSAIESDQNLSIFFKPGQLKPGSTMPINFSKKHPSSTPHFLSKQQSDSIPFASAHLPSLLQLFSFSAGSPQAGAVE TTLSLCELEPMTGETKFCATSLESMLDSVRSTFGSETKLLKALTTNQLKKSDKPISSSSSVQDYTVLKEPEEILTRKVMGCHTMPYPYLVYFCHSPGGET KVFKVLLGGGREGEVVEAVAVCHMDTSKWDRNNPSFRVLGIEPGEGPVCHFLPEFDIVWADLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10040475 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	5.1	0.8154
AT5G65660			hydroxyproline-rich glycoprote...		Lus10039633 [exp]	5.7	0.7760
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	5.7	0.8061
AT1G30040		ATGA2OX2	GIBBERELLIN 2-OXIDASE 2, gibbe...		Lus10023311 [exp]	6.6	0.7466
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	10.2	0.7864
AT3G22060			Receptor-like protein kinase-r...		Lus10039698 [exp]	10.7	0.7966
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	10.8	0.8180
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10020346 [exp]	12.8	0.8039
AT5G12170		CLT3	CRT (chloroquine-resistance tr...		Lus10000891 [exp]	16.0	0.7141
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10013148 [exp]	19.3	0.7954

Compare expression of checked genes

Lus10040475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.