Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49310 60 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011281 [exp] 129 / 9e-41 AT1G49310 63 / 7e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114400 [exp] 54 / 1e-10 AT1G49310 45 / 1e-07 unknown protein Potri.004G153200 [exp] 52 / 3e-10 AT1G49310 48 / 2e-08 unknown protein Potri.009G114800 [exp] 39 / 0.0002 ND / Potri.009G114701 [exp] 39 / 0.0002 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10950 [flax] [poplar] Organ_specific Organ specific protein
Representative CDS sequence Show only first row Show all	>Lus10040476 pacid=23173948 polypeptide=Lus10040476 locus=Lus10040476.g ID=Lus10040476.BGIv1.0 annot-version=v1.0 ATGAAACCCTGCAGCTTCACCCTCTCTTGCCTCCTCCTCTCCCTTCTACTGGCTACGGCGACGGTGAGCGAAGCAATCAGGGGAGATCCGCCGGCGGCGG AGGAGTACTGGAAGAAAGTGATGAAGAACGAGCCTCTCCCAAGCTCCATCAAGGAGCTGTTCAACGACGCCGCCGTTTCATCCTCCTCTGGTGACGAGGG AAAGAAGCTGAGGTTTGTGAAGGACTTCGACACGACAACCAACGCCATCATTTACCACGCCGCCGCCGCCGAAGAGCAAACAGTCCTCCCGTAA
AA sequence Show only first row Show all	>Lus10040476 pacid=23173948 polypeptide=Lus10040476 locus=Lus10040476.g ID=Lus10040476.BGIv1.0 annot-version=v1.0 MKPCSFTLSCLLLSLLLATATVSEAIRGDPPAAEEYWKKVMKNEPLPSSIKELFNDAAVSSSSGDEGKKLRFVKDFDTTTNAIIYHAAAAEEQTVLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49310			unknown protein		Lus10040476 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10030355 [exp]	4.6	0.9339
AT5G49190		ATSUS2, SSA, SU...	SUCROSE SYNTHASE FROM ARABIDOP...		Lus10010308 [exp]	13.5	0.9017
AT5G57500			Galactosyltransferase family p...		Lus10019998 [exp]	21.9	0.8903
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10032150 [exp]	22.2	0.9308
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10016720 [exp]	22.6	0.9301
AT1G17860			Kunitz family trypsin and prot...		Lus10007888 [exp]	25.0	0.9147
AT1G13360			unknown protein		Lus10041461 [exp]	25.7	0.9252
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10026518 [exp]	26.5	0.9273
AT2G04240		XERICO	RING/U-box superfamily protein...		Lus10019150 [exp]	30.9	0.8697
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	33.9	0.8712

Compare expression of checked genes

Lus10040476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.