Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11750 289 / 3e-98 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT1G66670 150 / 1e-43 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT5G45390 148 / 6e-43 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT1G02560 147 / 1e-42 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT5G23140 135 / 3e-38 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G12410 126 / 2e-34 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) ATCG00670 114 / 1e-30 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT4G17040 108 / 1e-27 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G09130 107 / 5e-27 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G49970 75 / 5e-15 SVR2, NCLPP5, CLPR1 SUPPRESSOR OF VARIEGATION 2, NUCLEAR CLPP 5, CLP protease proteolytic subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011282 [exp] 478 / 2e-172 AT1G11750 300 / 2e-102 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Lus10002422 [exp] 147 / 1e-42 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10012156 [exp] 147 / 2e-42 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10007589 [exp] 146 / 4e-42 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10001450 [exp] 147 / 9e-42 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10010003 [exp] 136 / 3e-38 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10025022 [exp] 135 / 5e-38 AT1G02560 313 / 3e-107 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10040982 [exp] 132 / 2e-36 AT5G23140 338 / 5e-118 nuclear-encoded CLP protease P7 (.1) Lus10010196 [exp] 129 / 5e-36 AT5G23140 395 / 4e-141 nuclear-encoded CLP protease P7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G152900 [exp] 281 / 5e-95 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.009G114001 [exp] 280 / 9e-95 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.003G103300 [exp] 152 / 2e-44 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.014G119700 [exp] 152 / 4e-44 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.002G195200 [exp] 151 / 4e-44 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.004G092100 [exp] 142 / 7e-40 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.007G071700 [exp] 137 / 2e-38 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.005G092600 [exp] 130 / 1e-36 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.001G115900 [exp] 120 / 2e-32 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) Potri.001G130601 [exp] 118 / 3e-32 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10040477 pacid=23174070 polypeptide=Lus10040477 locus=Lus10040477.g ID=Lus10040477.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTTCAGCCAGACTCTCAGCTCCTCCCCCGCTAACAATCTCCGTCTCTTCTCGTCCTTCTCATCCTCCTCCTCCTTCTTCCCTGCCTATCT TCTTTCCGACCAGAAGCTCACCTTGTTCTAAGCTCGTAGTCTCCGCCTCGTCTCGTCCTGATTCTTCGTCAACCGGAGTAACAGAGAAAGTGTTCCGGTC TCCGTTGAGTATAGACTTGAAGAATATCCACGGTTCTAATGCCAGCAACGCTCAAGATGAGAACAGGGAGAATCCACCCATAATGCCGAAAGTACGCACA CCTAGCGGAGGAGCTGTGGATCTGTTCTCCATGTTGTTTCGAAACCGCATCATCTTCATTGGCGAAGAAATTGATTCGCGAGTGGCTCAGAAAGTTATAT CGCAGCTTGTTACGCTTGCAAGTATCGATGAGGAGGCAGATATCATGATATATCTGAACAGCCCTGGTGGAAACACATACTCTGTGATGGCGATCTATGA CTGCATGTGCACGATAAAGCCTAGAGTCGGTACAGTGGGCTTTGGGATGATTGCAAGCCAAGCAGTGATTCTTCTTGCTGGCGGGGAAAAGGGAATGCGG TATTCAATGCCTAATTCCCGTGTAATGTTGCAACAACCACATACTGGATGCGGGGGTCCCGTGAAGGATGTGAGGCGGCAAGTGGATGAAGCTGTTCATA CTCGACAAAAAATTGACAAGATGTTTGCTGCGTTTACCGGCCAGACGCTCGAGAGAGTCCAAGAACTCACACAAAATGATCACTTCATGTATCCGGCAGA GGCATTGGACTTCGGCTTGATCGACGACATTCTGGGGACAGAAGAATGA
AA sequence Show only first row Show all	>Lus10040477 pacid=23174070 polypeptide=Lus10040477 locus=Lus10040477.g ID=Lus10040477.BGIv1.0 annot-version=v1.0 MAAASARLSAPPPLTISVSSRPSHPPPPSSLPIFFPTRSSPCSKLVVSASSRPDSSSTGVTEKVFRSPLSIDLKNIHGSNASNAQDENRENPPIMPKVRT PSGGAVDLFSMLFRNRIIFIGEEIDSRVAQKVISQLVTLASIDEEADIMIYLNSPGGNTYSVMAIYDCMCTIKPRVGTVGFGMIASQAVILLAGGEKGMR YSMPNSRVMLQQPHTGCGGPVKDVRRQVDEAVHTRQKIDKMFAAFTGQTLERVQELTQNDHFMYPAEALDFGLIDDILGTEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	0	1
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10029064 [exp]	3.7	0.9165
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	3.9	0.8913
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	4.2	0.8766
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	4.6	0.8788
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	4.7	0.8914
AT4G33480			unknown protein		Lus10020876 [exp]	5.5	0.8666
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	6.0	0.8493
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	8.9	0.8653
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	9.5	0.8816
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10017962 [exp]	10.2	0.8776

Compare expression of checked genes

Lus10040477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.