Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75670 230 / 3e-76 DNA-directed RNA polymerases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011283 [exp] 447 / 3e-155 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011280 [exp] 46 / 1e-05 AT1G49320 167 / 9e-51 unknown seed protein like 1 (.1) Lus10040475 [exp] 45 / 2e-05 AT1G49320 191 / 7e-60 unknown seed protein like 1 (.1) Lus10042335 [exp] 42 / 0.0002 AT1G49320 184 / 6e-57 unknown seed protein like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236800 [exp] 249 / 2e-83 AT1G75670 236 / 2e-79 DNA-directed RNA polymerases (.1.2) Potri.002G024601 [exp] 240 / 1e-79 AT1G75670 228 / 3e-76 DNA-directed RNA polymerases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF03876 [flax] [poplar] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
Representative CDS sequence Show only first row Show all	>Lus10040478 pacid=23174147 polypeptide=Lus10040478 locus=Lus10040478.g ID=Lus10040478.BGIv1.0 annot-version=v1.0 ATGGAAGGAATGAACGTAGTTGATGCTGATTTGAAAGTGTACATCCACCCTTCGCAGAGCAAGAACGTCCATCAAGCTATTCCCCGCGAGCTCAGCTCCT TGCTCTTCAAGTATAGCGATGATTACGACGGAGTGTTATTGGCTTTTAACGTTAGTCTTCCTGATACGAAAGGCCGAATCCTTCCTGGTATTCATGCTTT CTTTGCTGTGAGACTATCAGCTAAATTGCTCGTGTTTTCGCCTAAGCCAGATATGCTGTTAGAGGGGAAGGTGGTGAAACTGAGTGAAGAATCGATTCAT GCCATTGTTCTTGGCTTCTCTTCTGCTGTCATTATAGACGACGATATCCGTAAGGAGTTCAAATACAGGACGAAAAAGGGTGAAGGTTTGTTTGTCAACA GATATGACAAGCGTCATGCCATTAAGGTTGGAACTATAATCCGATTCTCTGTGAAGAGTTTGAATGAAGAAACACTGCACATCTATGGATCCTTGATGCC TGCTAACACAGGGAGCGTTAAGAGACTGGATAAAGAGTCAGACGACCACAGCTCTAAGCCAGAAAGTCTTGTAGTCAACAGCTCTTCGAAGAAGAGGAAA GAGCAGCAAGACACAGAGATGACAACAGAACACGGTAGCTCTGTCAAGGATGCTCGTCAACCAAACGATGGTAGCGAGCATAATAAGAAGTCGAAGAAGG CCGACGTGGTTAAGACTACCTTGCCGTTATGTGAACTGGAACTGATGATCTCCGAGGCCAAGTACTGCTTGACCTTGCTCGAGTTCATGCTTAACTCGGT TTGA
AA sequence Show only first row Show all	>Lus10040478 pacid=23174147 polypeptide=Lus10040478 locus=Lus10040478.g ID=Lus10040478.BGIv1.0 annot-version=v1.0 MEGMNVVDADLKVYIHPSQSKNVHQAIPRELSSLLFKYSDDYDGVLLAFNVSLPDTKGRILPGIHAFFAVRLSAKLLVFSPKPDMLLEGKVVKLSEESIH AIVLGFSSAVIIDDDIRKEFKYRTKKGEGLFVNRYDKRHAIKVGTIIRFSVKSLNEETLHIYGSLMPANTGSVKRLDKESDDHSSKPESLVVNSSSKKRK EQQDTEMTTEHGSSVKDARQPNDGSEHNKKSKKADVVKTTLPLCELELMISEAKYCLTLLEFMLNSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75670			DNA-directed RNA polymerases (...		Lus10040478 [exp]	0	1
AT5G66540			unknown protein		Lus10001234 [exp]	108.7	0.7878
AT1G36280			L-Aspartase-like family protei...		Lus10040229 [exp]	115.2	0.7530

Compare expression of checked genes

Lus10040478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.