Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22330 806 / 0 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G49830 317 / 3e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G67630 314 / 2e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011283 [exp] 826 / 0 AT5G22330 805 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011551 [exp] 330 / 1e-108 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019267 [exp] 330 / 3e-108 AT5G67630 792 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199100 [exp] 810 / 0 AT5G22330 788 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G160600 [exp] 798 / 0 AT5G22330 812 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G096800 [exp] 343 / 7e-114 AT5G67630 764 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G118900 [exp] 334 / 5e-110 AT5G67630 758 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06068 [flax] [poplar] TIP49 TIP49 P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10040479 pacid=23173884 polypeptide=Lus10040479 locus=Lus10040479.g ID=Lus10040479.BGIv1.0 annot-version=v1.0 ATGAAGATAGAAGAGGTACAGAGTACCGCGAAGAAGCAGAGAATCGCCACTCACACTCACATCAGAGGACTCGGCCTTGAGCCAAGTGGAAATGCAATCC CTCTGGCGGCTGGCTTCGTCGGTCAGACTGATGCCAGAGAAGCATCGGGTCTTGTTGTTGATATGATAAGGCAGAAGAAGATGGCTGGGAAGGCTCTTCT AATGGCTGGTCCTCCTGGTACCGGGAAGACAGCTTTGGCCCTTGGGATTTCTCAGGAACTTGGAAGCAAGGTTCCGTTCTGCCCAATGGTTGGATCAGAA GTATATTCATCAGAGGTGAAGAAAACTGAAGTTCTGATGGAACATTTCCGCAGAGCCATTGGGTTGCGTATCAAGGAAAATAAAGAGGTCTATGAAGGAG AGGTGACGGAACTATCCCCAGAAGAAACTGAAAGTGTGACTGGTGGATATGGTAAAAGCATTAGCCATGTAATAATTGGTTTGAAAACTGTCAAAGGGAC TAAGCAGCTGAAGTTGGATCCCACCATCTACGATGCTTTGATAAAGGAAAAGGTACCGGACTTCATCTTCGTAGCTGTGGGAGATGTTATATACATTGAA GCAAATAGTGGTGCAGTTAAAAGAGTCGGTAGAAGTGATGCTTTTGCTACGGAATTTGATCTTGAAGCAGAAGAGTATGTCCCACTTCCCAAGGGTGAAG TCCACAAAAAGAAGGAGATAGTTCAGGATGTTACGCTGCATGATCTAGATGCAGCTAATGCAAGACCTCAAGGTGGGCAAGACATATTATCTTTGATGGG GCAAATGATGAAGCCAAGAAAGACGGAAATAACTGACAAGCTACGCCAGGAAATTAATAAGGTTGTTAATAGATACATAGACGATGGTGTGGCAGAACTT GTTCCTGGAGTTCTGTTCATCGATGAGGTGCACATGCTGGACATGGAGTGCTTCTCGTACTTGAATCGTGCTCTGGAAAGCTCATTGTCTCCAATCGTAA TCTTTGCTACTAATAGAGGAATATGTAACGTAAGGTATGTGGTGAGCTTCAATATCATATATGACTACTTCCCCAATGGATCGATCAGTTCCAACTCTGA AAAATCGCTCTGGTTATTCTGCAGAGGAACTGATATGAATAGCCCTCACGGCATACCTGTTGACTTGCTGGATCGCTTGGTGATTATCCGCACACAAACC TACGGTCCTGCAGAAATGATACAGGTAGAGGGATTGACAGTTGACGAAGAAAGTCTAGCATTCCTCGGTGAGATCGGTCAGCAGACATCCTTAAGGCATG CTGTTCAGCTCTTATCTCCGGCCAGCATCGTTTCGAAGATGAACGGTAGAGATAACATTTACAAGGCGGATCTCGACGAAGTTTGTAGCTTATACCTTGA TGCCAAGTCCTCAGCTAAGCTACTTCAAGATCAGCAAGAGAAGTTTATTTCTTGA
AA sequence Show only first row Show all	>Lus10040479 pacid=23173884 polypeptide=Lus10040479 locus=Lus10040479.g ID=Lus10040479.BGIv1.0 annot-version=v1.0 MKIEEVQSTAKKQRIATHTHIRGLGLEPSGNAIPLAAGFVGQTDAREASGLVVDMIRQKKMAGKALLMAGPPGTGKTALALGISQELGSKVPFCPMVGSE VYSSEVKKTEVLMEHFRRAIGLRIKENKEVYEGEVTELSPEETESVTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVPDFIFVAVGDVIYIE ANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDDGVAEL VPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRYVVSFNIIYDYFPNGSISSNSEKSLWLFCRGTDMNSPHGIPVDLLDRLVIIRTQT YGPAEMIQVEGLTVDEESLAFLGEIGQQTSLRHAVQLLSPASIVSKMNGRDNIYKADLDEVCSLYLDAKSSAKLLQDQQEKFIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10040479 [exp]	0	1
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	7.5	0.9137
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10029026 [exp]	7.9	0.9129
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	8.1	0.9144
AT2G37990			ribosome biogenesis regulatory...		Lus10043278 [exp]	8.4	0.9082
AT4G24820			26S proteasome, regulatory sub...		Lus10014916 [exp]	8.8	0.9056
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	12.3	0.8861
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	13.3	0.9101
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004235 [exp]	14.1	0.9007
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	22.0	0.9039
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	24.3	0.9008

Compare expression of checked genes

Lus10040479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.