Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16190 135 / 1e-38 unknown protein AT1G49330 127 / 2e-35 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011284 [exp] 232 / 2e-78 AT2G16190 128 / 4e-37 unknown protein Lus10015036 [exp] 152 / 6e-46 AT1G49330 189 / 5e-59 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113900 [exp] 147 / 8e-43 AT1G49330 199 / 1e-61 hydroxyproline-rich glycoprotein family protein (.1) Potri.016G080300 [exp] 141 / 2e-41 AT1G49330 155 / 1e-45 hydroxyproline-rich glycoprotein family protein (.1) Potri.004G152600 [exp] 141 / 1e-40 AT1G49330 193 / 6e-59 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040480 pacid=23173858 polypeptide=Lus10040480 locus=Lus10040480.g ID=Lus10040480.BGIv1.0 annot-version=v1.0 ATGGCAAACACCACTCAACCTTCCTCCTCCGACACCTCCCTCAAACGAAAGCTCGGCCTATACATGTCAGACCCACCAATCCTCTCTCTTTCCCTATCGT TATTCAACCCCGAAGATCACATTGACCTCGCTCCTCCTCCCCGAAACAAACGAAAAACACCCGCGAAGAAAAACAAGAATACAAATATACTCCATCCGCC GCCCTATCCATGGGCGACGGAAAAAATCGCGAAGCTCCACACCCTCGAAGATCTCCGTTCGATGGGGATAATGGAGATCAAAGGGGAGGTGGAGTGCAAT AATAAGGAATGTAGTTATAGACAAGAGATTTCGTTCGATCTGAGCGAGAAGTTCGAGGAGGTGTGCGGCTACATTGCGAGCAACAGGGCGTCGATGCACG ATAGGGCGCCGGATCGGTGGATGCACCCGCGGCTGCAGAAGTGTGCGATGTGCGGGAAGGACGAAGCGATGAAGCCGGTGATTGGCGGGGAGAGGGATAA AGAGGAGATCAATTGGCTGTTTTTGTTGCTAGGGGAGTGGCTAGGGCTTTGTACGTTGGAGCAGTTGAAGTATTTCTGCATGCATTGTGGGGTTCATAGG ACTGGGGCGAAGAATCGGGTGGTTTACTTGACTTATTTGGAGGTTTGTAAGCAGCTTCATCCTGACGGTCCGTTTGATCATTGA
AA sequence Show only first row Show all	>Lus10040480 pacid=23173858 polypeptide=Lus10040480 locus=Lus10040480.g ID=Lus10040480.BGIv1.0 annot-version=v1.0 MANTTQPSSSDTSLKRKLGLYMSDPPILSLSLSLFNPEDHIDLAPPPRNKRKTPAKKNKNTNILHPPPYPWATEKIAKLHTLEDLRSMGIMEIKGEVECN NKECSYRQEISFDLSEKFEEVCGYIASNRASMHDRAPDRWMHPRLQKCAMCGKDEAMKPVIGGERDKEEINWLFLLLGEWLGLCTLEQLKYFCMHCGVHR TGAKNRVVYLTYLEVCKQLHPDGPFDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16190			unknown protein		Lus10040480 [exp]	0	1
AT2G31760		ATARI10, ARI10	ARABIDOPSIS ARIADNE 10, ARIADN...		Lus10000131 [exp]	1.0	0.7250
					Lus10026470 [exp]	3.5	0.6979
AT3G01960			unknown protein		Lus10012546 [exp]	7.5	0.7164
AT3G18180			Glycosyltransferase family 61 ...		Lus10032459 [exp]	7.6	0.5767
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10003378 [exp]	10.7	0.7002
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	11.4	0.6829
					Lus10034545 [exp]	12.5	0.6829
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	13.5	0.6829
AT1G72125			Major facilitator superfamily ...		Lus10001288 [exp]	14.0	0.6374
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	14.4	0.6829

Compare expression of checked genes

Lus10040480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.