Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49340 1507 / 0 ATPI4K ALPHA, ATPI4KALPHA Phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT1G51040 701 / 0 Protein kinase superfamily protein (.1) AT5G09350 197 / 8e-51 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1) AT5G64070 196 / 3e-50 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT1G60490 147 / 2e-35 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011285 [exp] 1912 / 0 AT1G49340 3010 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10011315 [exp] 326 / 2e-101 AT1G49340 307 / 9e-96 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10000833 [exp] 179 / 3e-45 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10030605 [exp] 134 / 5e-31 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10030885 [exp] 133 / 6e-31 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10002098 [exp] 116 / 1e-25 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10034915 [exp] 66 / 2e-12 AT1G49340 60 / 1e-11 Phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113700 [exp] 1582 / 0 AT1G49340 3062 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.004G152400 [exp] 1577 / 0 AT1G49340 2964 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.007G109000 [exp] 200 / 2e-51 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.005G059000 [exp] 197 / 1e-50 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.012G075100 [exp] 149 / 3e-36 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Potri.001G289200 [exp] 57 / 1e-07 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.009G084500 [exp] 52 / 4e-06 AT1G50030 4038 / 0.0 target of rapamycin (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase CL0020 [flax] [poplar] TPR PF00613 [flax] [poplar] PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain)
Representative CDS sequence Show only first row Show all	>Lus10040481 pacid=23174056 polypeptide=Lus10040481 locus=Lus10040481.g ID=Lus10040481.BGIv1.0 annot-version=v1.0 ATGGACCCGTTGATGGAGTTGTGCGAGCTCATCGCGAAGAATCCGTCGCAATTCAGCGATAAACTGACGTGGCTGTGCAACCGCTGCCCGCAGCCGGAGG CGCTACTCGGCGGATCGCCTAGGGTTTCGAGGTCCCAGCTCAATGCGGTCCTCGCGGTGGCGAGGTTCCTCTCCTTGGGGACGCCAGACGCGTCCGTCGA TCTCCGGCCGAAGTCCATCGTGTTAGAGTTCCTCCACGTGATTCCGTCGTCGTTCTCGCAGTCATTCTGGCCGCAGTCGTACACGGCGGACTCGATCGGG TCGTTCTACGGTGAGTTCCTGGGGCATTTGGTGAGTTGCGCCGAGACGTCGGCGGATTTCGGCGCGGAGATTGCTGGCTTTTTGGGAGTAGTTGTGATGG AAGCGGTTAATTATCACAATGCTGGTGACGGTGTGGTGATTTCGAGGGCTTTTTTGCTGGCGTTGACGGAGAATTTTCCGCCGATTTTGGCTTCTGATGG GGAGAAGCTGGTGACTTGTCTTATCGATCAGGTCTTAGGGGCAGCTGGTGATCAAGCGGGGTTAAACTCGGGTACTTCGTCGTCTCAGAGCTCGCCGTTG AATAAAGTCAATAATCATCAGCGTAACAATGGTATTTCCAGTCCGGCGAATGATCTGAGTGGGATATCTGGCGGGTCGTCCAGTGGATTGTCTACGACGT CAGCATTGATGAACGGAAGTGGGTTGATGTGGAAGAGTGGGTTTGATTCGATGGGCATGGGCGTAGGGTTGAACGATGGTTTGTTGCGGCAGCAAGCAAC TTTGTTTGAGGAGGAAAGTGTGGAGGGATTGGAGAAGCATGAAATCGCATTCAAGTTGATTGCTAATGTATTGACTCATGTGAAGCTTGACGTTAAGCTT TCGGAACAAGTAAGATTGATTGCTAAGAAGCAGCTACAGTCTCTGTCGGCGTTTTTGAAGATAAGGAAGCGCGACTGGAACGAACAAGGACAACAATTGA AAGCTAGGGTGAACTCTAAACTCTCAGTTTATCAAGCTGCAGCTAGAATGAAGATAAGGAGCCTTGCATCCCTTGATGCTGATGGTAAAACCTTCAAAAG ATTGGTTCTTGAAACTCTTGCATTGCTTATCGATGCTGCTGAAGCATGTCTGCTATCTGTGTGGCGGAAGTTAAGAATATGCGAAGAGCTGTTTAGGTCA TTGCTTGCTGGAATTGCACAAATTGCTGTGAGCAGGGGTGGTCAGCCACTTCGTGTTCTACTTATTCGTCTTAAACCCCTTGTGTTGACAGCATGTGCAC AAGCTGATACTTGGGATAGCAATCAGGGAGCTATGTTTGATAGTGTGATGAAGACAAGCTGCCAGATAATTGAATCTGGATGGATAAAGGACCGAGCTCC TGTTGATACTTTTATTTTGGGATTGGCAACAAGCATACGTGAGCGGAACGACTATGATGAGCAGGCTGAGAAGGAAAAACAAGGGGTTCCTCCCGTGCAG CTCAATCTCATACGTTTGCTAGCTGATTTAACCGTGGCTGTTAACAAGTCAGAAGTGGTTGACATGATTTTGCCACTTTTTGTTGAAAGCTTGGAGGAGG GTGATGCTTTAACTCCTGGCATATTGCGACTTCGACTTCTTGATGCTGTATCACGGATAGCAAGTCTAGGGTTTGAGAAATCCTATCGCGAGACAGTTGT CCTGATGACAAGAAGTTACTTGGGTAAACTGTCAAGTGTAGGATCTGCTGAAAACACGACTTTGCCAGCAGAAGCCAATACAGAACGTGTTGAGACTCTT CCTGCAGGATTCCGTTTGATAGCTAGTGGTCTAAAAAATCCAAAATTACGTGTAGACTACCGACATCGTCTTCTCTCTTTGTGCTCAGATGTGGGGCTGG CAGCTGAATCTAAGAGTGGAAGGAGTGGAGCAGATTTTATGGGTCCTCTACTTCCTGCTGTTGCTGAAGTCTGCTCCGATTTTGATCCTACAGTGAATGT CGAACCGTCACTTCTGAAACTCTTCCGTAACTTGTGGTTCTATGTTGCTCTGTTTGGTTTGGCACCACCGATTGTGAAAACTCCACAACAGGTGAAGTCC ACATCAACCACGCTGAATAGTGTAGGAAGCAATGGTGCACTTTCTCTTCAGGCTGTGGGTGGACCATACATGTGGAATGCACAGTGGTGTTCTGCTGTCC AACGCATTGCTCAAGGGACTCCTCCTCTTGTTGTCAGTTCTGTCAAATGGCTTGAAGATGAACTGGAACTCAATGCACTCCACAACCCAGGAAGCCGTCA AGCAAGTGGCAATGAGAAAGCTGCTCTAACCCAACGATCAGCTCTGTCAGCTGCATTGGGTGGCAGAGTTGAGGTTGCAGGAATGACCACAATCTCTGGT GTTAAAGCAACATATCTGCTTGCTGTAGCTTTTCTGGAGATAATTCGTTTCAGCAGCAATGGTGGGATTCTCAATGGGGATACCAGTTTAACTGCTTCCA GAAGTGCCTTCAGCTGCGTATTTGAATATCTAAAAACTCCAAACTTGATGCCTGCTGTCTTTCAATGTCTGACTGCGATAGTGCATCGAGCATTTGAAGC AGCTGTATCGTGGCTGGAAGAACGGATAACTGACACTGGCAAAGATGCTGCAATCAGAGAATTAACTCTTTTTGCCCATGCATGTTTCCTGATAAAAAGC ATGTCACTGAGAGAGGAGCACATCCGTGATATTGCTGTTAACTTGTTGACTCAGCTTCGAGATAAGTTTCCTCAGATCTTATGGAACTCGTCCTGTTTGG ACTCCCTATTATTTTCTGTTCACAATGACTCAACTTCAACCGCTGTTAATGATCCCTCTTGGGTAGCAACTGTTCGGGCATTGTACCAGAAAATTCTCAG GGAGTGGATCTGCATGTCGCTCTCATATGCTCCATGTACTAGCCAAGGTCTTCTTCAGGAAAAGCTCTGCAAGGCAAATACTTGGCAGAAGGCACAGCAA ACTACTGATGTGGTGTCTCTGCTAACTGAGATACGTATCGGAACTGGCAAGAATGATTGGACTGGAATTCGGACTGCTAATGTTCCGGCTGGGGTGCAAT TTGTTACTGCTGCGGAGAAAGGTGGGGATGTGGAAAAATCACAGTTTCGTGATATTTGTTCTCAGTCAACAGCGTTACTTCTATCCAATCTGACTTGTGA ATCAAAATTCAACATAGAGGGCTTTGCGCAACTGCTACGCCTTCTTTGCTGGTGTCCAGCATATATATCTACTCCAGATGCAATGGAGACTGGCGTCTTT ATATGGACTTGGTTAGTTTCTGCAGCACCCCAACTTGGATCTCTTGTTCTTGCCGAACTCGTGGACGCCTGGTTATGGACTATCGACACAAAGCGAGGGC TGTTTGCATATGATGTCAATTACTCTGGACCTGCTGCGAAACTAAGGCCTCAGCTCGCTCCTGGAGAACCAGAGCCACAGCCTGAAATTGATCCTGTTGA ACAGATCCTCGCTCATAGACTTTGGCTTGGCTTTTTCATTGATCGGTTTGAGGTAGTGCGGCATAACAGTGGCGAGCAACTCTTGCTCTTGGGTAGGCTA TTGCAAGGGACAATGAGGTTGCCTTGGAATTTTTCACGCCATCCTGCTGCTACTGGTACCTTTTTCACAGTCATGCTCCTTGGGCTCAAATTCAGCTCAT GTCATTCTCAGGGAAACCTGCAGAATTATAAAACCGGGCTTCAACTACTGGAAGATCGGATTTATAGAGCCTGTTTGGGCTGGTTTGCTTTTGAACCTGA GTGGTACAATGTGAACTATATGAATTTTGCTCAGAGTGAGGCTCAATCTGTATCAGTATTTGTTCACTATCTTTCCAATGAACGAGGGGATGCTCCTCTA TCTGACTCTAAGGGACGTGGGAGTGACAATGGAAGTTCGTTGGTTGATATGAATGATGAACATCACCCTGTGTGGGGTCACATGGAGAATTATGCTACCG GAAGGGAAAAGCGGAAACAGTTACTATTGATGCTATGTCAGCATGAGGCTGATAGGCTTGAAGTGTGGGCGCAACCTACTAACTCCAAAGAAAATGTTTC GCGTCCCAAAATCAGCTCAGATAAATGGATAGAATATGCTAGGACAGCTTTCTCCGTGGATCCCCATATTGCTTTATGCATGGCGTCAAGGTTCCCTGCA AATACTACTTTGAAGGCTGAAGTAACACAGTTGGTCCAGTCACATATTCTTGACGTGCGCACTTTACCAGAAGCACTTCCGTACTTTGTCACCCCAAAGG CTGTTGATGAAGATTCAGTGCTTTTGCAACAACTGCCACACTGGGCTGGTTGTACAATAACACAAGCACTAGAGTTCCTAACTCCTGCATACAAGGGTCA TCCTCGTGTGATGGCTTACGTTCTGAGAGTTTTGGAGTCTTATCCTCCTGAGCGTGTAACATTTTTCATGCCACAATTAGTCCAGTCTCTGCGGTATGAT GATGGGAAGTTAGTCGAAGGATATTTGCTGAGAGCAGCTCAGAGAAGTGATATCTTTGCACATATTCTGATTTGGCATTTGCAGGGAGAACAACCTGAAA CAGATGCAGTGAAAGATGGTGCAGTCCCAAAGGATGATGCCTTTCAAGAACTCTTGCCTGTTGTTCGTGAGCATATCGTTGATGGCTTCAATGACAAGGC CCGTGATGTTTTCGAAAGGGAGTTTGACTTTTTCGATCAAGTTACGTCAATCTCAGGTGTCCTCCTTCCACTGCCCAAGGATGAGCGTCGGGCTGGTATT CGGACGGAATTGGAGAAAATTAAAATGCAAGGAGAAGATCTTTATTTACCAACTGCAACAAACAAACTTGTCAGAGGCATCCGGGTGGATAGTGGCATAC CCTTGCAATCAGCAGCGAAAGTCCCGATCATGGTTACCTTTGATGTGGTTGATCGTGATGGCAGCCCCAATGATATTAAGCCTCAAGCTTGCATTTTCAA GGTTGGAGATGATTGCAGACAAGATGTGCTTGCCCTTCAAGTGATAACGCTTCTTAGAGACATCTTTGGTGCTGTCGGCCTTAATCTCTATTTGTTTCCC TACGGTGTCTTGCCAACCGGGCCAGGGAGAGGTATTATCGAGGTTGTGCCTAACTCACGGAGTCGAAGTCAGATGGGCGAAACAACAGATGGCGGTTTGT ACGAGATCTTTCAGCAGGACTTTGGTCCTGTCGGCTCGCCTAGTTTCGAAGCCGCTCGTGAAAACTTCATCATCAGCAGCGCCGGTTATGCAGTTGCCAG TCTTCTACTCCAACCGAAGGACAGACACAACGGGAACTTGCTTTTCGACAGTGATGGGAGGCTCGTCCACATTGATTTTGGATTCATATTCGAAATCTCC CCCGGTGGGAACATGCGGTTTGAGAGTGCACATTTCAAACTCAGCCACGAGATGACTCAGTTACTCGACCCATCAGGCGTCATGAAGAGCGAGACGTGGC ACCAATTCGTAAGCCTGTGCGTGAAAGGGTACCTCGCAGCACGCAGGTACATGGACGGAATCATCAACACGGTAATGATGATGCTCGACAGTGGCCTACC TTGCTTCAGTCGAGGAGACCCGATCGGGAACCTCCGAAAGAGGTTCCACCCGGAAATGAGCGAGAGGGAAGCCGCGAATTTCATGATCCATGTCTGCACA GACGCCTACAACAAATGGTCAACTGCAGGCTACGACTTGATACAGTATCTGCAGCAAGGAATCGAGAAGTGA
AA sequence Show only first row Show all	>Lus10040481 pacid=23174056 polypeptide=Lus10040481 locus=Lus10040481.g ID=Lus10040481.BGIv1.0 annot-version=v1.0 MDPLMELCELIAKNPSQFSDKLTWLCNRCPQPEALLGGSPRVSRSQLNAVLAVARFLSLGTPDASVDLRPKSIVLEFLHVIPSSFSQSFWPQSYTADSIG SFYGEFLGHLVSCAETSADFGAEIAGFLGVVVMEAVNYHNAGDGVVISRAFLLALTENFPPILASDGEKLVTCLIDQVLGAAGDQAGLNSGTSSSQSSPL NKVNNHQRNNGISSPANDLSGISGGSSSGLSTTSALMNGSGLMWKSGFDSMGMGVGLNDGLLRQQATLFEEESVEGLEKHEIAFKLIANVLTHVKLDVKL SEQVRLIAKKQLQSLSAFLKIRKRDWNEQGQQLKARVNSKLSVYQAAARMKIRSLASLDADGKTFKRLVLETLALLIDAAEACLLSVWRKLRICEELFRS LLAGIAQIAVSRGGQPLRVLLIRLKPLVLTACAQADTWDSNQGAMFDSVMKTSCQIIESGWIKDRAPVDTFILGLATSIRERNDYDEQAEKEKQGVPPVQ LNLIRLLADLTVAVNKSEVVDMILPLFVESLEEGDALTPGILRLRLLDAVSRIASLGFEKSYRETVVLMTRSYLGKLSSVGSAENTTLPAEANTERVETL PAGFRLIASGLKNPKLRVDYRHRLLSLCSDVGLAAESKSGRSGADFMGPLLPAVAEVCSDFDPTVNVEPSLLKLFRNLWFYVALFGLAPPIVKTPQQVKS TSTTLNSVGSNGALSLQAVGGPYMWNAQWCSAVQRIAQGTPPLVVSSVKWLEDELELNALHNPGSRQASGNEKAALTQRSALSAALGGRVEVAGMTTISG VKATYLLAVAFLEIIRFSSNGGILNGDTSLTASRSAFSCVFEYLKTPNLMPAVFQCLTAIVHRAFEAAVSWLEERITDTGKDAAIRELTLFAHACFLIKS MSLREEHIRDIAVNLLTQLRDKFPQILWNSSCLDSLLFSVHNDSTSTAVNDPSWVATVRALYQKILREWICMSLSYAPCTSQGLLQEKLCKANTWQKAQQ TTDVVSLLTEIRIGTGKNDWTGIRTANVPAGVQFVTAAEKGGDVEKSQFRDICSQSTALLLSNLTCESKFNIEGFAQLLRLLCWCPAYISTPDAMETGVF IWTWLVSAAPQLGSLVLAELVDAWLWTIDTKRGLFAYDVNYSGPAAKLRPQLAPGEPEPQPEIDPVEQILAHRLWLGFFIDRFEVVRHNSGEQLLLLGRL LQGTMRLPWNFSRHPAATGTFFTVMLLGLKFSSCHSQGNLQNYKTGLQLLEDRIYRACLGWFAFEPEWYNVNYMNFAQSEAQSVSVFVHYLSNERGDAPL SDSKGRGSDNGSSLVDMNDEHHPVWGHMENYATGREKRKQLLLMLCQHEADRLEVWAQPTNSKENVSRPKISSDKWIEYARTAFSVDPHIALCMASRFPA NTTLKAEVTQLVQSHILDVRTLPEALPYFVTPKAVDEDSVLLQQLPHWAGCTITQALEFLTPAYKGHPRVMAYVLRVLESYPPERVTFFMPQLVQSLRYD DGKLVEGYLLRAAQRSDIFAHILIWHLQGEQPETDAVKDGAVPKDDAFQELLPVVREHIVDGFNDKARDVFEREFDFFDQVTSISGVLLPLPKDERRAGI RTELEKIKMQGEDLYLPTATNKLVRGIRVDSGIPLQSAAKVPIMVTFDVVDRDGSPNDIKPQACIFKVGDDCRQDVLALQVITLLRDIFGAVGLNLYLFP YGVLPTGPGRGIIEVVPNSRSRSQMGETTDGGLYEIFQQDFGPVGSPSFEAARENFIISSAGYAVASLLLQPKDRHNGNLLFDSDGRLVHIDFGFIFEIS PGGNMRFESAHFKLSHEMTQLLDPSGVMKSETWHQFVSLCVKGYLAARRYMDGIINTVMMMLDSGLPCFSRGDPIGNLRKRFHPEMSEREAANFMIHVCT DAYNKWSTAGYDLIQYLQQGIEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	0	1
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	1.0	0.9879
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	1.7	0.9661
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	2.0	0.9708
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	2.8	0.9650
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	4.5	0.9352
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	5.7	0.9404
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	5.9	0.9616
AT5G12370		SEC10	exocyst complex component sec1...		Lus10036398 [exp]	6.0	0.9385
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	6.3	0.9458
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	6.9	0.9511

Compare expression of checked genes

Lus10040481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.