Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 678 / 0 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 659 / 0 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 655 / 0 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT4G36670 550 / 0 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G18480 519 / 0 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 447 / 5e-153 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 211 / 8e-62 ATINT1 inositol transporter 1 (.1) AT5G17010 195 / 6e-56 Major facilitator superfamily protein (.1.2.3.4) AT1G11260 192 / 1e-54 ATSTP1, STP1 sugar transporter 1 (.1) AT5G59250 189 / 2e-53 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011288 [exp] 954 / 0 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 870 / 0 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 837 / 0 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 691 / 0 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 686 / 0 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 633 / 0 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 576 / 0 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 525 / 0 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10014323 [exp] 526 / 3e-179 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113600 [exp] 783 / 0 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 754 / 0 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 741 / 0 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 553 / 0 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 482 / 2e-167 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.013G135200 [exp] 455 / 4e-156 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 441 / 1e-150 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 207 / 2e-60 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 206 / 6e-60 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.019G055600 [exp] 196 / 3e-56 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10040482 pacid=23173822 polypeptide=Lus10040482 locus=Lus10040482.g ID=Lus10040482.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCAAACGCCGGGGGCAACAAGTTGGCTGATTTCGACCCTCCGGCGAAGCCCAAGAGGAACAAGTTTGCCTTCGCGTGTGCTATTTTGGCTT CCATGACTTCCATCTTACTCGGCTATGATATCGGAGTGATGAGCGGAGCCGCCAAATTCATCAAGGACGACTTCAAGATCTCGGACGTGCAAGTGGAGGT GCTGGTCGGGATGCTTAACATTTACTCCCTCATCGGATCTGCCGCCGCCGGCAGGACGTCGGACTGGATTGGACGGCGGTACACCATCGTCGTCGCCGGC ATGATTTTCTTCGTCGGAGCACTGCTCATGGGATTCGCTACCAACTACGCGTTCCTCACGGTCGGCCGATTCGTTGCCGGAATAGGCGTCGGGTTCGCTC TCATGATTGCGCCGGTGTACACCGCCGAGGTGTCCCCTGCTTCTTCCCGCGGCTTCCTGACCTCTTTCCCCGAGGTTTTCATAAACGCCGGCATCTTACT TGGCTACGTCTCCAACTATGCCTTCTCCCACTTACCGGAACACCTCGGCTGGAGATTCATGCTCGGCGTCGGCGCTATCCCCTCCGTCTTCCTCGCCATC GGCGTCCTCGCCATGCCGGAGTCCCCACGGTGGCTAGTACTACAGGGCCGCCTCGGCGACGCCAAGAAGGTCCTGGACAAGACCTCCGATTCGCTGGAGG AATCCAAATCCAGGCTCGCCGACATCAAAGCCGCCGTCGGAATCCCCGAATCCTGCAACGACGACGTCGTTTCCGTCAGCAAACAGAGCCACGGCGAGGG AGTGTGGAAGGAGCTGCTCCTCAGACCCACCCCGGCGGTCCGACACATCTTGATCTGCGCAATTGGAATCCACTTCTTCCAGCAGGCATCTGGGATCGAC GCTGTTGTTCTTTACAGCCCAAGGATCTTCGAGAAGGCCGGGATTACATCCTCCGGCAAGCAGCTGATCGCGACGATTGCCGTCGGGTTCACTAAGACCG TGTTCATCCTCGTCGCCACTTTCTTGCTCGACAGAATCGGCCGGCGGCCGTTACTCCTGGGAAGCGTCGGCGGGATGGTGATCTCTTTAATAACCTTAGG ATGGTCCTTGGAAGTGATCGACCACTCAAAGGGGAAAGTGAACTGGGCAATCGGACTCTGCATCTCCATGGTGCTATCCTTCGTGGCATTCTTCTCAATC GGGATGGGACCCATCACGTGGGTCTACAGCTCGGAGATCTTCCCGCTCCGGCTGCGGGCACAGGGCACGGGAATGGGGGTCGCCGTGAACAGAGTAATCA GCGGCGTGATCTCGACGACGTTCATCTCGCTGTACAAGGCGATGACGATCAGCGGCGCGTTTTTCTTGTTTGCGGGGTTGGCGGCGGTGGCGTTCGTTTT CTTCTTCAGCTGCTACCCGGAGACGCAGGGGAGGACGCTGGAGGATATGGAGGTTCTGTTTGGGAGCCTGTTTGGGTGGAGGAAGAAAGCAGAGGAGTTG AAGATGGAAGAAGAGAAAAGTAAGGGGACTGAAGTTGAGTTAGAGAGAAAGTAG
AA sequence Show only first row Show all	>Lus10040482 pacid=23173822 polypeptide=Lus10040482 locus=Lus10040482.g ID=Lus10040482.BGIv1.0 annot-version=v1.0 MAPPNAGGNKLADFDPPAKPKRNKFAFACAILASMTSILLGYDIGVMSGAAKFIKDDFKISDVQVEVLVGMLNIYSLIGSAAAGRTSDWIGRRYTIVVAG MIFFVGALLMGFATNYAFLTVGRFVAGIGVGFALMIAPVYTAEVSPASSRGFLTSFPEVFINAGILLGYVSNYAFSHLPEHLGWRFMLGVGAIPSVFLAI GVLAMPESPRWLVLQGRLGDAKKVLDKTSDSLEESKSRLADIKAAVGIPESCNDDVVSVSKQSHGEGVWKELLLRPTPAVRHILICAIGIHFFQQASGID AVVLYSPRIFEKAGITSSGKQLIATIAVGFTKTVFILVATFLLDRIGRRPLLLGSVGGMVISLITLGWSLEVIDHSKGKVNWAIGLCISMVLSFVAFFSI GMGPITWVYSSEIFPLRLRAQGTGMGVAVNRVISGVISTTFISLYKAMTISGAFFLFAGLAAVAFVFFFSCYPETQGRTLEDMEVLFGSLFGWRKKAEEL KMEEEKSKGTEVELERK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10040482 [exp]	0	1
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Lus10021349 [exp]	4.2	0.8140
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	12.7	0.8421
AT3G56290			unknown protein		Lus10029051 [exp]	16.3	0.8394
AT1G75100		JAC1	J-domain protein required for ...		Lus10032709 [exp]	21.1	0.8201
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	21.1	0.8388
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10023096 [exp]	24.7	0.7795
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	28.4	0.8307
					Lus10017803 [exp]	31.4	0.8047
AT1G79600			Protein kinase superfamily pro...		Lus10037291 [exp]	31.6	0.6686
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	31.9	0.8047

Compare expression of checked genes

Lus10040482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.