Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47740 271 / 7e-92 PPPDE putative thiol peptidase family protein (.1.2) AT5G25170 222 / 3e-73 PPPDE putative thiol peptidase family protein (.1) AT2G25190 216 / 2e-70 PPPDE putative thiol peptidase family protein (.1) AT5G47310 214 / 1e-69 PPPDE putative thiol peptidase family protein (.1) AT1G80690 213 / 2e-69 PPPDE putative thiol peptidase family protein (.1) AT4G17486 212 / 3e-69 PPPDE putative thiol peptidase family protein (.1.2) AT4G31980 197 / 1e-58 unknown protein AT4G25680 78 / 3e-17 PPPDE putative thiol peptidase family protein (.1) AT4G25660 76 / 3e-16 PPPDE putative thiol peptidase family protein (.1) AT3G07090 58 / 6e-10 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011291 [exp] 495 / 0 AT1G47740 270 / 3e-91 PPPDE putative thiol peptidase family protein (.1.2) Lus10039492 [exp] 325 / 3e-114 AT1G47740 213 / 2e-69 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 286 / 5e-98 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10032708 [exp] 280 / 2e-95 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10005341 [exp] 224 / 5e-74 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1) Lus10018326 [exp] 223 / 1e-73 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 222 / 2e-73 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10041021 [exp] 220 / 2e-72 AT5G25170 309 / 5e-108 PPPDE putative thiol peptidase family protein (.1) Lus10040170 [exp] 213 / 8e-70 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113168 [exp] 311 / 7e-108 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 311 / 9e-108 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 305 / 2e-105 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.002G134200 [exp] 293 / 1e-100 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 291 / 3e-100 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G261500 [exp] 236 / 1e-78 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 228 / 2e-75 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 215 / 1e-70 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 213 / 1e-69 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 209 / 4e-68 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10040485 pacid=23174161 polypeptide=Lus10040485 locus=Lus10040485.g ID=Lus10040485.BGIv1.0 annot-version=v1.0 ATGGTCTCAGGAGGATCACAAAAGGGCAACAGGTGGCACTCCATCGATGCATCTCCTCTCAAGGCAAAGCTAGCTAACAAATTCTGCATCTTCCCAAAGT CAAAGAACCTAGCAAGCTACACTCGTGGCGACACGCCAGTTTACCTCAATGTGTATGACCTCACTACCGCAAATGGTTATGTCTACTGGGCTGGCCTTGG AATCTTCCACTCTGCAGTTGAAGTTCATGGTGTGGAGTATGCTTTCGGAGCCCATGACTTCTCGACCACAGGTGTCTTCGATGTAGAGCCACGAAACTGT CCCGGTTACTTGTTCAGGAGGTCCTTGTTCATGGGGACGACCACGTTGGATCCTAAGCAGGTCAGGGAATTCATGGAGCGTCAGTCTGCTAACTACAATG GTGATACGTATCATTTGATCTACAAGAACTGCAACCATTTTAGCCAGGATATCTGTTTCAAGCTCACCGGGAAGTCTATCCCTAAGTGGGTCAATCGGCT CGCAAAAATAGGTTCTGTGTGCAACTGTGTTTTACCGGAGACGCTAAGGGATCCGAGCGGAGCCCACGAATCAAGTAGCCAAGACGAATGCGAGAGCGAG AAGAAGAGGCTTAGGAGAAGTGCATTCAGTGCTGGGTTTTCATCAATGTCGATCTCTCAAGCGGAAGTTTCCATTTCATCATTGTTCAGACATTCTTACT ACAACAACACCCGCCATGGGAGTTGA
AA sequence Show only first row Show all	>Lus10040485 pacid=23174161 polypeptide=Lus10040485 locus=Lus10040485.g ID=Lus10040485.BGIv1.0 annot-version=v1.0 MVSGGSQKGNRWHSIDASPLKAKLANKFCIFPKSKNLASYTRGDTPVYLNVYDLTTANGYVYWAGLGIFHSAVEVHGVEYAFGAHDFSTTGVFDVEPRNC PGYLFRRSLFMGTTTLDPKQVREFMERQSANYNGDTYHLIYKNCNHFSQDICFKLTGKSIPKWVNRLAKIGSVCNCVLPETLRDPSGAHESSSQDECESE KKRLRRSAFSAGFSSMSISQAEVSISSLFRHSYYNNTRHGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	0	1
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	1.4	0.9208
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10032505 [exp]	2.0	0.9339
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	2.4	0.9085
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	5.9	0.8907
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	5.9	0.8818
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	10.8	0.8805
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	12.8	0.9056
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	13.9	0.8812
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	14.9	0.8765
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10019000 [exp]	16.9	0.8212

Compare expression of checked genes

Lus10040485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.