Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36750 260 / 1e-87 Quinone reductase family protein (.1) AT4G27270 219 / 2e-72 Quinone reductase family protein (.1) AT5G54500 217 / 2e-71 FQR1 flavodoxin-like quinone reductase 1 (.1.2) AT5G58800 201 / 4e-65 Quinone reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014325 [exp] 260 / 7e-88 AT4G36750 370 / 2e-130 Quinone reductase family protein (.1) Lus10041718 [exp] 259 / 5e-87 AT4G36750 357 / 3e-125 Quinone reductase family protein (.1) Lus10026035 [exp] 258 / 1e-86 AT4G36750 371 / 4e-131 Quinone reductase family protein (.1) Lus10018401 [exp] 213 / 8e-70 AT4G27270 342 / 3e-121 Quinone reductase family protein (.1) Lus10006748 [exp] 209 / 4e-68 AT4G27270 323 / 5e-114 Quinone reductase family protein (.1) Lus10005862 [exp] 204 / 1e-66 AT5G58800 290 / 5e-101 Quinone reductase family protein (.1.2) Lus10007612 [exp] 205 / 3e-66 AT4G27270 329 / 1e-115 Quinone reductase family protein (.1) Lus10020076 [exp] 200 / 7e-65 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1) Lus10024032 [exp] 163 / 6e-51 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G151100 [exp] 295 / 3e-101 AT4G36750 311 / 4e-107 Quinone reductase family protein (.1) Potri.007G029600 [exp] 261 / 3e-88 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1) Potri.005G126200 [exp] 261 / 5e-88 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1) Potri.011G033100 [exp] 219 / 1e-72 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1) Potri.001G410700 [exp] 218 / 8e-72 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1) Potri.004G028900 [exp] 217 / 2e-71 AT4G27270 352 / 2e-125 Quinone reductase family protein (.1) Potri.011G129400 [exp] 213 / 8e-70 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1) Potri.009G044400 [exp] 212 / 1e-69 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10040486 pacid=23173923 polypeptide=Lus10040486 locus=Lus10040486.g ID=Lus10040486.BGIv1.0 annot-version=v1.0 ATGGGTAAAGGAGGTGGGTGTTTCCCCAGCAAGACAATGCCTCCTCCATTAATCCAACCTTCTCCAGCTCCATTGACTCTCCCAGAACAAAAAAACGAAA CAACCAAACCGATCAAGAAGATATTCATAATCTACTACACGATGTACGGCGCCGTGGAGGCCCTGGCGAGGAAAATGAAGCAGGGAGTTGACTCGGTCCA AGGAGTTGAAGGGCTGTTATACAGAGTTCCAGAGACTCTGTCAATGGAGACTCTGTACCAGATGAAAGCCAAGGAAACTAGCAAAGAAGTGCCTTTGATA CGCGTGGAAGAGATGGTTAATGCCGACGGGTTCTTGTTCGGGTTCCCGACCCGGTTCGGGTCAATGGCTGCTCAGATGAAGGCGTTCTTCGAGGGGACGG AGGAGCAGAAGCTGGCAGGGGTACCGGCTGGGTTGTTCGTTAGTACTGGTACTCAAGGTGGCGGCCAAGAGACTACTGCGTTGACGGCGATCACTCAACT GGCGCACCATGGGATGATCTACGTACCAATTGGGTACACATTTGGTGAAGAAATGTTCAGAATGGACGACGGAATCAGAGGAGGGTCGCCGTATGGTGCG GGTGTTTTCTCAGGTGATGGAACAAGGCAACCCAGTGAGACTGAACTTGGTCTTGCTGAACACCAGGGCAGATACATGGCCACTTTGGTCAAGAGATTTG CGGCCTCTTCTTGA
AA sequence Show only first row Show all	>Lus10040486 pacid=23173923 polypeptide=Lus10040486 locus=Lus10040486.g ID=Lus10040486.BGIv1.0 annot-version=v1.0 MGKGGGCFPSKTMPPPLIQPSPAPLTLPEQKNETTKPIKKIFIIYYTMYGAVEALARKMKQGVDSVQGVEGLLYRVPETLSMETLYQMKAKETSKEVPLI RVEEMVNADGFLFGFPTRFGSMAAQMKAFFEGTEEQKLAGVPAGLFVSTGTQGGGQETTALTAITQLAHHGMIYVPIGYTFGEEMFRMDDGIRGGSPYGA GVFSGDGTRQPSETELGLAEHQGRYMATLVKRFAASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36750			Quinone reductase family prote...		Lus10040486 [exp]	0	1
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	5.1	0.9270
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	5.9	0.8949
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	8.1	0.9128
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	8.3	0.9117
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	9.7	0.9034
AT5G42860			unknown protein		Lus10009749 [exp]	11.6	0.8591
					Lus10019304 [exp]	11.7	0.8925
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	13.4	0.9095
AT1G21000			PLATZ transcription factor fam...		Lus10027735 [exp]	13.7	0.8831
AT3G07470			Protein of unknown function, D...		Lus10019216 [exp]	14.2	0.8140

Compare expression of checked genes

Lus10040486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.