Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76850 1347 / 0 SEC5A exocyst complex component sec5 (.1) AT1G21170 1332 / 0 SEC5B Exocyst complex component SEC5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011294 [exp] 2029 / 0 AT1G76850 1431 / 0.0 exocyst complex component sec5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068900 [exp] 1550 / 0 AT1G21170 1490 / 0.0 Exocyst complex component SEC5 (.1) Potri.005G191500 [exp] 1480 / 0 AT1G21170 1419 / 0.0 Exocyst complex component SEC5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040488 pacid=23174143 polypeptide=Lus10040488 locus=Lus10040488.g ID=Lus10040488.BGIv1.0 annot-version=v1.0 ATGTCTATAGACAGCGACGACGAGGACGCGCTCCTCCAGATGGCGCTCAAGGAGCAATCTCAGCGGGATCTCAATTACCAGCGGCCGTCGGCGGGGTCCT CCTCTAATCAGCGGAAGCCGGTGTCCAATTTCGTCCAGCCTCCCAAATCCGCCGGCTCCAGGGCCGCCGCGGCGCCGGCTCACCGTCACCAGAAGAGCAG GGGAGGCGGCGGCGGCAGTACCATGGACGAAGACGAGGACTCGGAGGTGGAGATGCTGAGCATATCGAGCGGCGACGAGGAAGTGAGCAAAGATCGGGAA GGCGGGAAAGGGAGAGCTGGCGGTGGTGGAAAGGCGGGGAAGGACGAGGATCGCTGGGATGGCGGGGAGCCTGATTGCTGGAAGCGAGTGGATGAGAACG AGCTTGCTAGGAGAGTTCGTGAAATGCGAGAGTCAAGAACAGCACCGGCGGCCCAAAAGTTTGAGGCCAAGCCTGCAACTTTTACTACTAGAAAGGGGCT TACTAGTCTATTGTCATTCCCTCGTGGAATGGAGTGTATAGATCCATTAGGATTGGGGATTATAGATAACAGAACGTTAAGGTTGATCACAGAGAGATCA GCTAGTGAGCCAACGAAGTCCGAAAAGGATATAGACAATAATCTACGAGAGAAATTGTTATATTTGTCTGACAAGTTTGATGCAAAGCTGTTCCTGTCAC GAATACACCAAGTTACCAGTGCAGCGGATTTGGAGGCTGGTGCCCTAGCTCTAAAAACTGATCTCAAAGGAAGGACCCAGCAGAGGAAACAGTTGGTGAA GGACAATTTTGATTGTTTTGTCTCTTGCAAAACTACAATTGATGATATTGAATCCAAACTAAGACGGATAGAAGAAGATCCAGAAGGATCTGGGACTTCT CATCTGTATAATAGCATGCAAGGAGTCAGTTCACTTGCTGTTCGTGCATTTGAACCTCTATTTGAAAGACAGGCCCAAGCAGAGAAAATCAGGTCTGTCC AAGGCATGCTTCAGAGGTTCCGAACACTATTCAACCTGCCAAGCACAATTCGGGGAAGCCTTAGCAAGGGTGAATACGATTTGGCTGTTAGAGAGTATAA GAAGGCGAAATCAGTTGCTCTTCCTTCTCATGTGAGTATATTGAAACGTGTTCTTGAAGAGGTTGAAAAAGTGATGCATGAGTTTAAGGGAACACTATAC AAGTCCATGGAGGATCCGCAAATAGAGTTGACCAATAATAACAGAATTCGTGGTTTGCTTGAGAAATGCTCATTGGATCATGAAGCACGGATGGAAATGT TGTATAATGAGATGAAACAAAGAGCTCTATTGGATGCAAAATGGAGGCAAATTCAAAACGAAACTTCAGATGTGGATCCAGTGGATGTGCAATCACTGGT TTTAACTGGTGAAGAAGTTGATGCTCTTAGGGGAAAGCATATCCGTAGATTAACTGCTGTAATTGTCCATCACATACCAGCCTTCTGGAAAGTAGCACTT TCTGTTTTCAGTGGGAAATTTGCTAAGTCTTCCCAAGTTTCTGTTGAGTCAAAGCTTAGCGCAACATCAAATAAGGCCGAGGAAAGAGTCGTTGATGTGA GATCGACTCATTCTCTTGATGAAGTTGCTGGGATGATACGGAGTACTATCAAGGCATACGGATCAAAGGTTCACACCACATTTCATGACCTTGAGGAAGC AAACATTCTTCGTTCTTATATGAGTGATGCCATAAAGGAAATATCCAAAGCCTGCAAAGGTTTTGAAGTGAAAGAATCGGCTCCACCTACTGCTGCATTG GCACTCAAATCTCTTCAGGCTGATATCACAAAGATATACATACTCCGACTTTGTACCTGGATGCGGGCAACCACTGCAGAGATGTCAAAAGACGAAACAT GGACTCTTGTGTCTATACTGGAAAGGAACAAATCTCCGTACACTATATCGTTCCTGCCTCTTGCATTCCGCTCGGTTGTAGCATCAGCAATGGATCAGAT CAATCTGTTGATTCAGTCCTTGAAGAGCGAGGCTGGGAAGTCGGAAGATATATTTGCGCAAGTTCAGGAAATTCAATTATCTATCAGACTTGCCTTCTTT AACTGTTTTCTGGACTTTGCAGGTCATCTGGAACATATTGGAACTGAGCTAGTGCAAAATAAATCAAATTTACAGAACGGGTATATTCATGAAGTTGAAG AGAAGTCGTCTAGTCTCCCAGGAACTGTTGTTAATGCACATCAAAAGCTGCTGATTGTGTTGAGTAATATTGGATACTGCAAAGACGAACTTTCACATGA GCTTTTCAAAAAGTACAAGTGTATATGGCTGCAATCCAGAGAAAGTGATGAAGATGATATCGACATACAAGATTTGGTGACCTCTTTCTCCGGTCTTGAA GAGAAGGTCCTCGAACAATATACTTTTGCGAAGGCAAATTTGATAAGGACAGCAGCTATGAACTATTTGCTCAACTCTGGCATTCAATGGGGAGCAGCTC CTCCTGTTAAAGGAGTTCGTGATGCAGCCGTGGAGTTGTTGCACACTCTGGTCTCAGTGCATGCAGAGGTATTTGCTGGTGCCAAGCCCCTATTAGACAA AACTATCGGCATTCTTGTCGAAGGTCTGATCGATACTTTTCTCAGCCTTTTCCATGAAAACGAAGAAGGTGATTTCCGGTCATTAGATACGAACGGTTTT TGTCAACTGATGCTTGAGCTCGAATACTTCGAGACCATACTGAATCCATACTTCACGCCTCCCGCAAGAGAGTCACTCAAGTCCTTGCAAGGCGTGCTGT TGGAGAAAGCCACCGAGAACGTCTCCGAAATCGCCGAGAATCCAGGCCACCAACGCCGGCCGACTCGTGGGAGCGAAGATGCAGCTTCTGACGACAGACA ACAAGGAACAGTATCTCCAGACGACCTAATCGCTCTTGCTCAGCAATACAGCTCTGAACTGCTACAAGACGAGCTCGAGAGGACTCGAATCAACACAGCA TGCTTCATCGAGTCGACTCCCTTGGACACGGTGCCTGAATCCGCCAAAGCCTTCGACTTGCGGGGCGACGCAATGGATTCTCCCCCGCAACACTATGTAC AGACCATAAAGCCGGTAGTGCCACCTCCTCCTGCATTTCGCCTGAGGTAG
AA sequence Show only first row Show all	>Lus10040488 pacid=23174143 polypeptide=Lus10040488 locus=Lus10040488.g ID=Lus10040488.BGIv1.0 annot-version=v1.0 MSIDSDDEDALLQMALKEQSQRDLNYQRPSAGSSSNQRKPVSNFVQPPKSAGSRAAAAPAHRHQKSRGGGGGSTMDEDEDSEVEMLSISSGDEEVSKDRE GGKGRAGGGGKAGKDEDRWDGGEPDCWKRVDENELARRVREMRESRTAPAAQKFEAKPATFTTRKGLTSLLSFPRGMECIDPLGLGIIDNRTLRLITERS ASEPTKSEKDIDNNLREKLLYLSDKFDAKLFLSRIHQVTSAADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLRRIEEDPEGSGTS HLYNSMQGVSSLAVRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSLSKGEYDLAVREYKKAKSVALPSHVSILKRVLEEVEKVMHEFKGTLY KSMEDPQIELTNNNRIRGLLEKCSLDHEARMEMLYNEMKQRALLDAKWRQIQNETSDVDPVDVQSLVLTGEEVDALRGKHIRRLTAVIVHHIPAFWKVAL SVFSGKFAKSSQVSVESKLSATSNKAEERVVDVRSTHSLDEVAGMIRSTIKAYGSKVHTTFHDLEEANILRSYMSDAIKEISKACKGFEVKESAPPTAAL ALKSLQADITKIYILRLCTWMRATTAEMSKDETWTLVSILERNKSPYTISFLPLAFRSVVASAMDQINLLIQSLKSEAGKSEDIFAQVQEIQLSIRLAFF NCFLDFAGHLEHIGTELVQNKSNLQNGYIHEVEEKSSSLPGTVVNAHQKLLIVLSNIGYCKDELSHELFKKYKCIWLQSRESDEDDIDIQDLVTSFSGLE EKVLEQYTFAKANLIRTAAMNYLLNSGIQWGAAPPVKGVRDAAVELLHTLVSVHAEVFAGAKPLLDKTIGILVEGLIDTFLSLFHENEEGDFRSLDTNGF CQLMLELEYFETILNPYFTPPARESLKSLQGVLLEKATENVSEIAENPGHQRRPTRGSEDAASDDRQQGTVSPDDLIALAQQYSSELLQDELERTRINTA CFIESTPLDTVPESAKAFDLRGDAMDSPPQHYVQTIKPVVPPPPAFRLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	0	1
AT3G12590			unknown protein		Lus10001698 [exp]	1.4	0.8939
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10020366 [exp]	2.6	0.8408
AT4G20300			Protein of unknown function (D...		Lus10036240 [exp]	3.0	0.8363
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	3.5	0.8593
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	4.0	0.8509
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	6.0	0.8432
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	7.1	0.8285
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	7.4	0.8438
AT5G26760			unknown protein		Lus10005906 [exp]	7.7	0.8627
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	15.2	0.8277

Compare expression of checked genes

Lus10040488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.