Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34320 415 / 1e-144 Protein of unknown function (DUF677) (.1) AT4G34330 294 / 1e-97 Protein of unknown function (DUF677) (.1) AT2G18630 294 / 6e-97 Protein of unknown function (DUF677) (.1) AT5G66675 291 / 1e-95 Protein of unknown function (DUF677) (.1) AT5G66670 202 / 5e-61 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT5G66660 189 / 4e-56 Protein of unknown function (DUF677) (.1) AT3G28270 112 / 1e-27 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G28290 93 / 8e-21 AT14A Protein of unknown function (DUF677) (.1) AT3G28300 93 / 8e-21 AT14A Protein of unknown function (DUF677) (.1) AT3G57100 77 / 2e-15 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011295 [exp] 603 / 0 AT4G34320 495 / 3e-176 Protein of unknown function (DUF677) (.1) Lus10040334 [exp] 306 / 5e-102 AT2G18630 429 / 4e-150 Protein of unknown function (DUF677) (.1) Lus10023459 [exp] 301 / 1e-99 AT2G18630 419 / 9e-146 Protein of unknown function (DUF677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G150800 [exp] 441 / 8e-155 AT4G34320 536 / 0.0 Protein of unknown function (DUF677) (.1) Potri.T125304 [exp] 429 / 2e-150 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.009G112430 [exp] 429 / 2e-150 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.007G031200 [exp] 286 / 4e-94 AT2G18630 387 / 3e-133 Protein of unknown function (DUF677) (.1) Potri.005G127401 [exp] 253 / 5e-81 AT2G18630 339 / 2e-114 Protein of unknown function (DUF677) (.1) Potri.005G127200 [exp] 248 / 2e-79 AT2G18630 337 / 8e-114 Protein of unknown function (DUF677) (.1) Potri.005G127300 [exp] 244 / 8e-78 AT2G18630 340 / 4e-115 Protein of unknown function (DUF677) (.1) Potri.002G067300 [exp] 47 / 1e-05 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10040489 pacid=23174024 polypeptide=Lus10040489 locus=Lus10040489.g ID=Lus10040489.BGIv1.0 annot-version=v1.0 ATGGGGAACCAGACGAGCAGCAGTGCTGGTACTTCTAAGAAGCCGAGCAACTGCAGCAGCAGCATGACGACGGAGCAGCTGAGCTCCTACGCAGCCGCCT GCCGCGCCGATGAGGATCTCCGCTCGTTCGACACGAATCTGCAGCAGCGGACCAGCCACGTCATCAACACTCTGGCGGTGGGAGTCGAGGTCAGAGCTCT GTCTTTCGATTCGCTCAAGGAGGTTACGGAGTGCTTGCTGGAGATGAACCAGGAAGTTGTGAAGGTGATCCTCGATTGTAAGAAGGATATATGGAAGAGC CAGGATCTGTTCGAGCTCGTCGAGGAGTACTTTGACAATAGTTTGCAGACGCTCGATTTCTGCGCTGCGCTGGAGAAGTCGTTGAAGCGTGCTAGGGATA ATCAGCTGATGCTGCTCGTCGCGCTGCAGGAGTTCGACGAGGAGATGAAGAAAAGCTCGTTGGAATCAGAACCGGGGAAGAGTATGACTAGATCGTACGG AAGGACGGTGGAGGAGTTGAGGAATTTTAAGGAGGCCGGCGATCCTTTTACTGATGAGTTCTACAGGACGTTTCAGTCGGTTTACAGGCAGCAGGTGCAA ATGCTGGAGAAGTTACAGAGCAAGAAAGGCAAGCTTGACAAGAAACTCCGATTCGGCGCAGCAAGTCCCCCCGCCGTACTTATCTGCTCAGTGGTGGCAG CAGCCATGGCGGCGCCGCCAGTCGCCGCCGCACTCGCAGCCGCGACCTCTATCCCGTTGGGGTCAATGGGGAAGTGGATCGACTCGCTGTGGAAGAACTA CGAGACCGCCGTGAAAGGTCAGAAGGAGATTCTGGGGACGATGCAGGTGGGGACTTACGTCGCCATCAAAGATCTGGACACGATCCGGGTCATGGTGGAG CGGCTGGAGGTGGAGATCGGGTCTCTGGAAAAGGCGGCGGAGTTCGCTGCCGCCGACGGCGGTGGAGATGAGGCGGCGGTGAGGATTGGGATGGAGGAGA TACGGAAGAAGCTGGGTGGGTTCATGAAGAATGTGGAGGAGCTGGGTTTGCAGGCAGAGGTTTGTAGCAGGGATATCCGGCGAGCGAGGACGGTGGTTCT TCAGCGGATCATTAAGCAACCTAACAACTGA
AA sequence Show only first row Show all	>Lus10040489 pacid=23174024 polypeptide=Lus10040489 locus=Lus10040489.g ID=Lus10040489.BGIv1.0 annot-version=v1.0 MGNQTSSSAGTSKKPSNCSSSMTTEQLSSYAAACRADEDLRSFDTNLQQRTSHVINTLAVGVEVRALSFDSLKEVTECLLEMNQEVVKVILDCKKDIWKS QDLFELVEEYFDNSLQTLDFCAALEKSLKRARDNQLMLLVALQEFDEEMKKSSLESEPGKSMTRSYGRTVEELRNFKEAGDPFTDEFYRTFQSVYRQQVQ MLEKLQSKKGKLDKKLRFGAASPPAVLICSVVAAAMAAPPVAAALAAATSIPLGSMGKWIDSLWKNYETAVKGQKEILGTMQVGTYVAIKDLDTIRVMVE RLEVEIGSLEKAAEFAAADGGGDEAAVRIGMEEIRKKLGGFMKNVEELGLQAEVCSRDIRRARTVVLQRIIKQPNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	0	1
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	2.0	0.9624
AT5G38700			unknown protein		Lus10002433 [exp]	3.2	0.9590
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	3.5	0.9522
AT1G64700			unknown protein		Lus10008274 [exp]	4.9	0.9455
AT2G45720			ARM repeat superfamily protein...		Lus10016848 [exp]	5.1	0.9002
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	5.5	0.9423
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	6.5	0.9283
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10022972 [exp]	7.7	0.8622
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	8.4	0.9273
AT1G29290			unknown protein		Lus10007309 [exp]	9.8	0.9242

Compare expression of checked genes

Lus10040489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.