Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18860 1060 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT5G23430 88 / 1e-17 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 87 / 3e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 86 / 9e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18130 82 / 1e-16 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G48630 82 / 1e-16 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G61210 85 / 2e-16 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G49040 84 / 2e-16 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT3G49660 81 / 3e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 78 / 3e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011296 [exp] 1421 / 0 AT3G18860 1089 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10014674 [exp] 89 / 7e-19 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 88 / 2e-18 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10040449 [exp] 90 / 5e-18 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10023563 [exp] 87 / 4e-17 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10011224 [exp] 85 / 2e-16 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 85 / 2e-16 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 84 / 3e-16 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 82 / 2e-15 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G112184 [exp] 1113 / 0 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.T125104 [exp] 1111 / 0 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.004G150700 [exp] 1103 / 0 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G255400 [exp] 89 / 8e-18 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 88 / 1e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.008G002300 [exp] 88 / 2e-17 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 86 / 4e-17 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.015G049500 [exp] 84 / 2e-16 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.011G045500 [exp] 82 / 1e-15 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 78 / 3e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08324 [flax] [poplar] PUL PUL domain CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF09070 [flax] [poplar] PFU PFU (PLAA family ubiquitin binding)
Representative CDS sequence Show only first row Show all	>Lus10040490 pacid=23173927 polypeptide=Lus10040490 locus=Lus10040490.g ID=Lus10040490.BGIv1.0 annot-version=v1.0 ATGGACATGGAAGTCGATTTTAAGCAGTACGAGCTCAGCTGTGAACTTCACGGCCACGAAGATGATGTAAGATCGGTTTCTCCTCCCTGCTCGATTTTGT TGTTCTCGTTACTTTTCGGTACTGTTCCAATCGATCTCGCTAGTGACGATTCAAGTTCATCTCCTGATGTTCTTTGGAGCTCCACGCTCGCTCTGGTTCG GGGTATATGTGTGTGTGAAAATGCTGGGATAGCAACTTCTTCGCGAGACAAGACGGTAAGGTTTTGGTCTCCGGATCCATCAGACAAGCGAAACTATACC TCGTCGAAGATATTCCTGGGACATTCAAGTTTTGTGGGTCCGTTAACTTGGATTTCGCCTAGTGAAGAGTACCCAGAAGGCGGGATTGTATCTGGTGGAA TGGATACATTGATATTAGTTTGGAGTGTAAGTTCTGCAGAGAAGGTGCAGACTCTGCAGGGACATCAGTTGCAAGTTACAGGTGTTGTGTTTGATAATGA GGACATCATCTCAAGTTCAGTTGATTGTACTCTAAGACGGTGGAGGAAGGGCCAAGTTGTTGATTCCTGGGAGGCTCATAAGTCGGCAGTACAAGCAGTT ATAAAACTTCCATCTGGAGAACTTGTTTCAGGGTCTAGTGACACTACCGTTAAACTTTGGAAAGGAAAAACTTGTTTGCACACCTTTGTTGGGCATACAG ACACTGTCCGAAGCTTGGCAGTCATGCCTGAACTGGGCCTTCTTTCCGCATCCCATGATGGATCCATTAGATTATGGGCATTAACCGGGGAAGTATTGCT GGAGATGGTTGGTCACACTTCCATAGTCTATTCAGTCGACTCCCATTGTTCTGGCCTTATTGTCAGTGGTAGTGAGGATCGGTCGGCAAAGATATGGAAA GATGGAAGCTGTGTCCAGACTATAGAACATCCTGGTTGTGTTTGGGATGCCAAGTTTCTGGAGAATGGTGACATTGTAACTGCATGTTCAGATGGGGTTG TACGTATATGGACTTCAAATCAAGACAGAATTGCAGACAAGACAAATCTAGAACACTACAATTCACAGCTTTCCGAGTACAAGTTAAGCAGGAAAAGAGT CGGAGGTCTAAAACTGGAGGAATTGCCTGGTTTGGATGCTTTACAAATTCCAGGAAGCACTGATGGCCAGACGAAAGTCATAAGAGAAGGTGACTGTGGG GTTGCGTATTCATGGAATTTGAGAGAATACCGATGGGACAAGATTGGCGAAGTTGTTGATGGACCAGATGATGGCGTGGGAAAGCCAAAAACTCTTGATG GCACTGCATATGACTTCGTATTTGATGTTGACATCGGAGATGGCGAGCCTATTCGTAAACTGCCTTACAATCGATCAGATAACCCATATGATGCTGCTGA TAAGTGGCTTCTGAAGGAGAACCTTCCTCTTTCTTACCGTCAACAAGTTGTGGAGTTTATACTTCAAAATGCTGGACAAACTAGTGCTCCTTTGAATCCG TCGTTTCGTGACCCTTACACTGGCGCAAATGCTTATGTACCTGGAGCAACTTCCAAGACATCTGGTGTTCCAGCAAAGCCTAGTTTCAAGCATATCCCTA AGAAAGGAATGGTTGTTTTTGACGTTGCTCAGTTCGATGGGATTATGAAAAAGATGACTGAGTTTAACAATGCCTTACTGTCCGAAGAGGATAAAAATAA GGTTTCTCTCTCGGAACTGGAGGTGTCAAGACTGGGTGCTATCATTAAAGTCTTAAAGGACACATCTCATTATCACACTAGTAAATTAGCTGAAGAGGAC ATTGAGTTGTTGCTGAAATCGCTAAAGTCATGGCCTCCTGCTATGAGTTTCCCAGCGATTGATATTCTGAGGATGACTGTCCTACACCCCGATGGTGCTA ATTTGCTCCTGAAGCATTTTCAAGACAAAAATGGTACACAAAAGAATAACCCTTCTAAACAGTTCATCTATAAGCAACCCGCTGTCTTCACGATAGTTTT ATATGATGTGTTGCCAGGTATACTTCTGGAAACAATCAGGAAAGTTACAGGAGAAAATCCTCTTGTCCCAAACCTGTTGACAACTGTTCGTCTTGTGACT AACCTGTTCAAGAACTCAGAGTATCACAACTGGCTGCTGAAGCATCGCAATGAGATTCTCGATGCGTTCTCGAATGTTACATCGTGTCCAAACAAGAATG TGCTGTTGTCGTTTTCGACCATGATACTCAACTATGCAGTTCTATTGATCGCGAATAAAGATGAAGAAGGTCAATATCAGGTTCTTTCCGCAGCTTTCGA GATAGCGGAACACGACACGCTGGATGCCGATACGAAATTTAGAGCTCTGGTAGCTATTGGATCGCTGATGCTTGATGGTCTGGTGAAAGGAGTGGCTTTG GACTTGGGCATCGACAAGGTTGCCAAAGCAGCCAAGTCTTCCAACGACACCAAGCTCTCCGAAATCGGAGCTGATATCGAAATGCTAGCGAAACAGTCTT GA
AA sequence Show only first row Show all	>Lus10040490 pacid=23173927 polypeptide=Lus10040490 locus=Lus10040490.g ID=Lus10040490.BGIv1.0 annot-version=v1.0 MDMEVDFKQYELSCELHGHEDDVRSVSPPCSILLFSLLFGTVPIDLASDDSSSSPDVLWSSTLALVRGICVCENAGIATSSRDKTVRFWSPDPSDKRNYT SSKIFLGHSSFVGPLTWISPSEEYPEGGIVSGGMDTLILVWSVSSAEKVQTLQGHQLQVTGVVFDNEDIISSSVDCTLRRWRKGQVVDSWEAHKSAVQAV IKLPSGELVSGSSDTTVKLWKGKTCLHTFVGHTDTVRSLAVMPELGLLSASHDGSIRLWALTGEVLLEMVGHTSIVYSVDSHCSGLIVSGSEDRSAKIWK DGSCVQTIEHPGCVWDAKFLENGDIVTACSDGVVRIWTSNQDRIADKTNLEHYNSQLSEYKLSRKRVGGLKLEELPGLDALQIPGSTDGQTKVIREGDCG VAYSWNLREYRWDKIGEVVDGPDDGVGKPKTLDGTAYDFVFDVDIGDGEPIRKLPYNRSDNPYDAADKWLLKENLPLSYRQQVVEFILQNAGQTSAPLNP SFRDPYTGANAYVPGATSKTSGVPAKPSFKHIPKKGMVVFDVAQFDGIMKKMTEFNNALLSEEDKNKVSLSELEVSRLGAIIKVLKDTSHYHTSKLAEED IELLLKSLKSWPPAMSFPAIDILRMTVLHPDGANLLLKHFQDKNGTQKNNPSKQFIYKQPAVFTIVLYDVLPGILLETIRKVTGENPLVPNLLTTVRLVT NLFKNSEYHNWLLKHRNEILDAFSNVTSCPNKNVLLSFSTMILNYAVLLIANKDEEGQYQVLSAAFEIAEHDTLDADTKFRALVAIGSLMLDGLVKGVAL DLGIDKVAKAAKSSNDTKLSEIGADIEMLAKQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18860			transducin family protein / WD...		Lus10040490 [exp]	0	1
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10025509 [exp]	6.0	0.7900
AT3G58640			Mitogen activated protein kina...		Lus10033608 [exp]	13.9	0.7803
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10024964 [exp]	17.9	0.7181
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	20.6	0.7837
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	23.8	0.7802
AT3G43220			Phosphoinositide phosphatase f...		Lus10039913 [exp]	27.7	0.7754
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	29.3	0.7550
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	30.5	0.7413
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	34.2	0.7631
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026727 [exp]	35.7	0.7411

Compare expression of checked genes

Lus10040490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.