Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57660 1753 / 0 NRPA1 nuclear RNA polymerase A1 (.1) AT5G60040 427 / 3e-125 NRPC1 nuclear RNA polymerase C1 (.1.2) AT4G35800 365 / 2e-102 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT2G40030 99 / 2e-20 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G63020 97 / 1e-19 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) ATCG00180 95 / 3e-19 ATCG00180.1, RPOC1 DNA-directed RNA polymerase family protein (.1) ATCG00170 70 / 2e-11 ATCG00170.1, RPOC2 DNA-directed RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011299 [exp] 3162 / 0 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1) Lus10015971 [exp] 402 / 2e-116 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10041856 [exp] 358 / 3e-100 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10013536 [exp] 189 / 5e-48 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10028403 [exp] 159 / 8e-39 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10002955 [exp] 105 / 3e-22 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10006339 [exp] 102 / 2e-21 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002748 [exp] 100 / 9e-21 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10000051 [exp] 77 / 4e-16 AT5G60040 224 / 5e-69 nuclear RNA polymerase C1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G055300 [exp] 2040 / 0 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.001G341900 [exp] 395 / 6e-114 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.005G107600 [exp] 358 / 3e-100 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.001G111300 [exp] 106 / 9e-23 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.003G196900 [exp] 101 / 5e-21 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 100 / 6e-21 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.013G140850 [exp] 89 / 2e-17 ATCG00180 1181 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G028000 [exp] 86 / 2e-17 ATCG00180 516 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.013G140260 [exp] 67 / 2e-10 ATCG00170 2104 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G028101 [exp] 45 / 0.0002 ATCG00170 516 / 5e-174 DNA-directed RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05000 [flax] [poplar] RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF04983 [flax] [poplar] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04997 [flax] [poplar] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04998 [flax] [poplar] RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF00623 [flax] [poplar] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
Representative CDS sequence Show only first row Show all	>Lus10040493 pacid=23174169 polypeptide=Lus10040493 locus=Lus10040493.g ID=Lus10040493.BGIv1.0 annot-version=v1.0 ATGGAGGCCCTCACTGAGGTTGTGACCAAGGCGGTTGGTTCCGTGTCGTTCAGCGCCTATTCAGCTGATGAGGTCCGGAAGCTGAGTGTTCTCAAGGTTA CTAATCCGATGTTGGAAACCGGTGACCCTGGCTCGGCTCTTAGTGATCCTGCCCCTGGTGGTCTCTATGATCCCTCGCTAGGGCCTCTGAATCGGTCTAT AAAATGTAAGACTTGTGGCCAGAAATGGGAACACTGCCCAGGACATTGTGGCCATATTGAGCTAGTTCTTCCGGCCTATAATCCTCTGCTGTTTAACTTT CTGTACAAAATTCTTCACCAAACCTGTTTCTCTTGTCTTCATTTCAGAGCTGATAGTAACCATGTTGCGAAGTGTGTTACTCAGTTGAAACTCATCTCAA AAGGAGATATTGTTGGGGCTAAGTTAATTGATTTAGTCTCGGTAGATGAGACTGAAACTCCTGATGCAAGTGAAGGCAGCCAAGGATCTGCATCTACAGT TCATTCGGGGTCACAAGCTCAAAATGATGACGATATGGAGCCACTTGAATGGACCTCCCTTCAGTTTGCAGAGGCTATGTCGATCATATATAACTTTCTG AAGAAAGGGACGCAGAAGTGCAAGCAATGTGGTGCAAAAAACCCTAAGATTAGCAAGCCTGCTTTTGGATGGGTTAAAATGGATGGCATGTCTGATAGTG CTATCAGAGCAAATATAATAACAGGGCGGCACCTATCAGGGCTGTTAGATGGTGAACCTGATATAGAGGATGAAGATGAACGCATGACGAACCCTGGCAA AGCTTTTGCCAGCCAGAAAAACTCAGGATCCTGCCATCTTCTCCCAAAACAGGTGAAATCAATATTAGAAATTTTATGGGAGAACGAGAAGGCTTTCTGC ATGATCATGAGTAATATTCAGCAGAAAAGACTGAGTGGCAATCAAGCAGGCCCATCTATGTTTTTTCTTGAAGTTATTTTAGTAGCTCCAATCAAGTTCC GTCCTCCTGTAAAGGGGGGTGATGCGGTCATGGATAATCCTCAGACCGTTCTACTAGGCAAAGTGCTGCAAGCTAATTTAGCTCTGGCGAATGCTCATGC TCATGCTAATACGGATGAAGTGGTTAGAAAGCGGTGGCTAGATCTTCAACAATGTATAAATATTTTGTTTGATAGCAAATCTGCTAAAGGTCCCGGTGAC AAAGAATTGTCCAATGGAATATGTCAAATACTTGAAAAGAAAGAAGGCCTGTTTCGTCAAAAAATGATGGGGAAGAGGGTTAATTATGCTTGTCGCTCAG TTATATCCCCGGATCCCTACTTAGGAGTAAATGAAATAGGAATTCCACCTTGCTTTGCCATAAAGTTGACTTATCCTGAGCGAGTGACTCCATGGAATGT TGCCAAATTGAGGAATTCTGTAATAAATGGGCCGAACAATTATCCAGGAGCAACTCATTTGGTTGATAAGTCCATTAATATACTACAATCTAGCAAGAAA TCTCGGGCTTCACTATCAAGGACGCTACCTTCGGCTACAGGTGCTCTCCGAGAACATGGGAAGGGTTCTAATTGCGCATATGAAGGAAAAACTGTCTATC GCCACTTGCAAGATGGGGACATTGTGCTCTGCAATCGACAGCCGACACTTCATAAGCCTAGTATAATGGCACACGTCGTCAAAGTGCTGAAAGGGGAAAA GACACTTCGTATGCACTATGCCAATTGCGGTACATACAATGCTGACTTTGACGGTGATGAAATGAATGTCCATTTCCCACAAGACCATATTTCCCGTGCC GAGGGGTACAACATTGTCAATGCTAATAATCAATATGTCAAGCCTTCGAATGGAGAACCCCTTCGCAGTCTCATCCAGGACCATGTTATTGGTTCTGTAT TGCTTACGAAGAGGGATACATTTTTGTTCTTAGAAGTGTTCTACCAGTTATTATATATCTCCGGTGTCTTCACTTCTTCTAGGACTTCTTTCAGTGGAAA ATCTGGCCAGAAAGTTTTTCTGGCTTGTCCTGAAGACGCTTTTCAGATTTTCCAACCTGCAATTCTCAAACCGATCCCTCTCTGGACTGGAAAACAGGTC ATTACTGTTATCCTAAACCTTATAACAAAGGGTCATTCCGTCACTGTGGAAAAGGATGCGAAGATATCCAGTGACTTCTTCAGGAGCAAAAGTACCAAAC GTGACAGAATTTCTGAAAAAAGAAGTGAAGGAGGCTCCATTAAAATAAAGCCCGACGAGGAGAAGATTTTGGTATCTAAAAATGAATTGCTTCGTGGTGT TATTGACAAAGCTCAGTTTGGTGAATATGGTTTAGTGCACACAGTTCAGGAACTCTTCGGCTCAGATGCTGCAGGCACCCTTCTATCCATTTTCAGTCGA TTGTTTACAGGTTACCTGCAGATGCACGCTTTCACATGCGGGGTTGATGATTTGTTGATATTGAAAGACAAAGATGAAGCAAGGAAGAGACAGCTTGAAG GGTGCGAGAAGGATGCTGAACTTGTGCATCGTCATTTTATTGGGATTAAAGATGAGAAGCTAAGGATAGAGCCTAAAGACTTGCAATTCAATATCGAAAA GATAATGCGAAGTGAAGGGGAATCTGCTGTGACATATTTGGATAACCAGATGAGAAGTGAACTTAATTCCAAAACAAACTCGGGGGTTATCAGTGAGCTG CTATCTGAGGGGGCTGTTAAACTCTCTGTGCATAACTGTATATATCTTATGACGACTTCAGGCGCCAAAGGTAGCAAGGTCAATTTCCAACAGATTTCTT CTTTTTTGGGTCAACAAGAATTGGAGGGGAAAAGGGTCCCTCGGATGGTTTCTGGAAAGACATTACCCAGCTTTCATCCATGGGACTGGGCAGCCCGAGC TGGCGGATTTATTATCGATCGTTTTCTTACGGGTCTCCGTCCTCAAGAATATTATTTCCATTGCATGGCTGGTCGAGAAGGGTTAGTTGATACAGCAGTG AAGACATCACGTAGTGGATATCTGCAAAGATGCCTGATAAAAAATCTCGAGTGCCTGAAGATAAGTTATGATCATACTGTTCGTGATGCTGATGGCTCAA TTATTCAGTTTCAATATGGAGAGGACGGCGTCGATGTTTCCCAAACCAGCTTCCTTGCCAAATTTGATTCATTAGCGAAGAACCAAGAAGTAATTTTCAA AACATGCGGTCAGCAGCCTCCTATGTTCAACAGCTACATCTCCGAATTGCCCAAATCTCTGAAAGACAAAGCAGACAATTTCCTGGACGATTCCTCCTTA ATGGATCGAATCTCTTCAAATATGGTAAAGAAGGCAGATGTTCATAACTTGATGAAGCTGAAGTTTCTCCGAAGCCTTGCTCAGCCTGGAGAACCAGTTG GTGTGCTTGCTGCTCAATCTGTTGGAGAACCATCGACACAAATGACATTGAATACGTTCCATTTAGCCGGACGAGGTGAGGCAAACGTCACATTGGGTAT CCCTCGTCTTCAAGAGATCTTAATGATGGCTTCAAGTAAAATCCAGACTCCAATTATGACCTGCCCTTTGAAAGAGGGGAAAACTAAAGAGGTGGCAGAT CGCCTTGCTGATAAATTTAGAAAGATCAGGGTGGCAGATATAGTAAAGAGCATGGAGGTCTCTGTAACTCCGTTTGCCGTTCAGGACTGGCAAGCTTGTA GAATTTACAAGCTGAAAATGAAGCTTCACAGGCCTGCACATTACCCGGCACACGCAAAACTCGACACAGAAGACTGGGAAGAAACTTTAGAAGGGCAGTT CGTGAGGGGTTTGGAGGATGCTATACAGAATCATCTAATCCTGCTCTCCAAAATCAGGGGCATTTCCAACTTTGTGGCTTCGAAATCGAAGCCTTCGGGT GATGATACGGAAGGTGAGGGTGTTAGTACCAAAAAGAAGTCGTCCATTAGTTTTGATGATGATGGTGATGACGATGGTGCCTTCGGTGATGGTGAAGAGA CTGAGGATCTTGGTTCAGATGCACGAAAACAGAAAAGTCAAACTACCGAGGATGTTGACTACGAAGACAATGACGAAGATGATCATGTCAATCCCGAGGG TTCAGTGACCACCATGGGTGGATCTGGTTTCGAAAGTGGTAGCGGAAGTGACACCGATGAAGCCGAGAATCGGGATGCGGATGAAATGGTCGACGAAGGA AATTCGGGAGCCTCCTCGAAGCGTAATTCCGCAAGCGATTCTCCAGCGAAAACGAAGAAGGATAAAAGCAAAACAGAAGGCAAAAGTAACAAGCTGAAGA GAACTATTGCAAGGAAAGATTACGACAGAGCGATTTATGTGGCGGCAAAGGGATTCCACTTTGAGGTCCATTTCAGGTTCACCAATGAACCTCATATTCT TCTCTCCGAGATTGCACAGAAGGTTTCGAAGGTGGGTTTTATTCAGAACCCCGGGATGATTGAGCAGTGCCGTGTTACAGACTGCAAAGACAGTCAAGTG ATCTATTACGGGAAAGACCCAAAGAAGAGGGTGGCCATCAAACCGGACGAGAAGAAGAAAATCCCTGCATTGCAAGCCATGGGAGTCGAGATCAAGTTGT TCTGGAAGATGCTGAAGGATCTCGACATCAATTACATATACACCAACGACATCCACTCCATTCTCAACACATACGGGGTGGAAGCCGCGAGGGAGGCCAT AATTCGAGAGATCAATCATGTGTTTGGCTCTTACGGGATATCCGTCAGCGACCGCCACTTGTCTCTCATAGCAGACTACATGACCCACACGGGAGAGTAT CGGCCCTTGAGCCGTTTGGGTGGCATCTCCAAGTCGGTATCGCCCTTTACGAAGATGTCGTTTGAGACTGCTTCTAAGTTCATCGTTCAAGCTGCATTGC ACGGGGAGACGGATTATTTGGACGCCCCGTCTGCGAGGATATGTCTCGGGTTGCCCGTGAAGATGGGTACCGGGTCTTTCGATGTCATGCACTCTTTTGA TGTCATGCCCGAATTGGAAATTTGA
AA sequence Show only first row Show all	>Lus10040493 pacid=23174169 polypeptide=Lus10040493 locus=Lus10040493.g ID=Lus10040493.BGIv1.0 annot-version=v1.0 MEALTEVVTKAVGSVSFSAYSADEVRKLSVLKVTNPMLETGDPGSALSDPAPGGLYDPSLGPLNRSIKCKTCGQKWEHCPGHCGHIELVLPAYNPLLFNF LYKILHQTCFSCLHFRADSNHVAKCVTQLKLISKGDIVGAKLIDLVSVDETETPDASEGSQGSASTVHSGSQAQNDDDMEPLEWTSLQFAEAMSIIYNFL KKGTQKCKQCGAKNPKISKPAFGWVKMDGMSDSAIRANIITGRHLSGLLDGEPDIEDEDERMTNPGKAFASQKNSGSCHLLPKQVKSILEILWENEKAFC MIMSNIQQKRLSGNQAGPSMFFLEVILVAPIKFRPPVKGGDAVMDNPQTVLLGKVLQANLALANAHAHANTDEVVRKRWLDLQQCINILFDSKSAKGPGD KELSNGICQILEKKEGLFRQKMMGKRVNYACRSVISPDPYLGVNEIGIPPCFAIKLTYPERVTPWNVAKLRNSVINGPNNYPGATHLVDKSINILQSSKK SRASLSRTLPSATGALREHGKGSNCAYEGKTVYRHLQDGDIVLCNRQPTLHKPSIMAHVVKVLKGEKTLRMHYANCGTYNADFDGDEMNVHFPQDHISRA EGYNIVNANNQYVKPSNGEPLRSLIQDHVIGSVLLTKRDTFLFLEVFYQLLYISGVFTSSRTSFSGKSGQKVFLACPEDAFQIFQPAILKPIPLWTGKQV ITVILNLITKGHSVTVEKDAKISSDFFRSKSTKRDRISEKRSEGGSIKIKPDEEKILVSKNELLRGVIDKAQFGEYGLVHTVQELFGSDAAGTLLSIFSR LFTGYLQMHAFTCGVDDLLILKDKDEARKRQLEGCEKDAELVHRHFIGIKDEKLRIEPKDLQFNIEKIMRSEGESAVTYLDNQMRSELNSKTNSGVISEL LSEGAVKLSVHNCIYLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPSFHPWDWAARAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAV KTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIIQFQYGEDGVDVSQTSFLAKFDSLAKNQEVIFKTCGQQPPMFNSYISELPKSLKDKADNFLDDSSL MDRISSNMVKKADVHNLMKLKFLRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEANVTLGIPRLQEILMMASSKIQTPIMTCPLKEGKTKEVAD RLADKFRKIRVADIVKSMEVSVTPFAVQDWQACRIYKLKMKLHRPAHYPAHAKLDTEDWEETLEGQFVRGLEDAIQNHLILLSKIRGISNFVASKSKPSG DDTEGEGVSTKKKSSISFDDDGDDDGAFGDGEETEDLGSDARKQKSQTTEDVDYEDNDEDDHVNPEGSVTTMGGSGFESGSGSDTDEAENRDADEMVDEG NSGASSKRNSASDSPAKTKKDKSKTEGKSNKLKRTIARKDYDRAIYVAAKGFHFEVHFRFTNEPHILLSEIAQKVSKVGFIQNPGMIEQCRVTDCKDSQV IYYGKDPKKRVAIKPDEKKKIPALQAMGVEIKLFWKMLKDLDINYIYTNDIHSILNTYGVEAAREAIIREINHVFGSYGISVSDRHLSLIADYMTHTGEY RPLSRLGGISKSVSPFTKMSFETASKFIVQAALHGETDYLDAPSARICLGLPVKMGTGSFDVMHSFDVMPELEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	0	1
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	1.7	0.9554
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	3.5	0.9538
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	4.6	0.9500
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	5.3	0.9424
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	5.9	0.9401
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	6.3	0.9380
AT4G19610			nucleotide binding;nucleic aci...		Lus10018277 [exp]	6.5	0.9221
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	7.7	0.9389
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	10.9	0.9234
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	11.8	0.9386

Compare expression of checked genes

Lus10040493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.