Plant FIBer expression Database

Lus10040494 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57680 684 / 0 Peptidase S41 family protein (.1)
AT4G17740 248 / 3e-76 Peptidase S41 family protein (.1.2)
AT5G46390 188 / 1e-53 Peptidase S41 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023704
[exp]
262 / 8e-81 AT4G17740 597 / 0.0 Peptidase S41 family protein (.1.2)
Lus10004402
[exp]
260 / 1e-79 AT4G17740 610 / 0.0 Peptidase S41 family protein (.1.2)
Lus10004601
[exp]
206 / 2e-60 AT5G46390 619 / 0.0 Peptidase S41 family protein (.1.2)
Lus10004545
[exp]
144 / 7e-38 AT5G46390 488 / 2e-170 Peptidase S41 family protein (.1.2)
Lus10008801
[exp]
109 / 5e-25 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Lus10011300
[exp]
76 / 3e-18 AT3G57680 73 / 3e-18 Peptidase S41 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G055400
[exp]
729 / 0 AT3G57680 668 / 0.0 Peptidase S41 family protein (.1)
Potri.008G173900
[exp]
247 / 1e-75 AT4G17740 699 / 0.0 Peptidase S41 family protein (.1.2)
Potri.011G078700
[exp]
206 / 1e-60 AT5G46390 575 / 0.0 Peptidase S41 family protein (.1.2)
Potri.010G063400
[exp]
84 / 2e-19 AT4G17740 174 / 3e-53 Peptidase S41 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0466 PDZ-like PF00595 PDZ PDZ domain
CL0127 ClpP_crotonase PF03572 Peptidase_S41 Peptidase family S41
Representative CDS sequence
>Lus10040494 pacid=23174112 polypeptide=Lus10040494 locus=Lus10040494.g ID=Lus10040494.BGIv1.0 annot-version=v1.0
ATGGACTCTCTCCGCCGCTCACCAACCTCCACTTCCACGATACGGACCCAGAGCCAGCGATGTCTCATATCCGAGAAGAAGAGATGGACTATGAGATTCT
CCAATCACGCATCCGTCAATCGGACTGCAAGGAGAACGGTGACGGCGTCGTCCTATAACGGCGGCGGAGGTAAGGATCGTGATGAATCTCCGATGCGAAA
GTCGATTGGGAAAGGTGTCGTCGGTTTCGCCGCTGCCGCCGCCACTCTGGCTGCCGTTTGCTGCTCCGAACCTCCTCCGGCTTCCGCCGAGTCTCTCACG
GTTGCCTTCCCGGTTTCCCGTGCTCGTGAGGTGAATACAGTTCAGAGGACGCTTATTGAGGCATGGGGTTTGATCAGGGAGACGTTCGTAGATCCAACGT
TCAATCATCAAGATTGGGACTTAAAGCTGCAGCAAACCATGGTGGAGATGTTTCCACTAAGTTCATCTGATGCTGCGTACAAAAAAATCAGTGGGATGCT
TTCGACTCTCGGGGATCCCTTCACTCGGATTATTAGTCCAAAGGAATACCAGAGTTTTAGAATCGGCAGTGATGGGAATTTGCAAGGAGTGGGCGTGTTC
ATCAACTTGGAACCCAAAACCGGCCATTTGGTTGTCTTATCTTGCATAGAGGGAGGACCGGCTGCTCGTGCTGGAATACAGGAGGGCGATGAGTTGATCG
AGATTGATGGTGAGCAATTGCATGGCGTGGACAGCGAGGTGGCAGCACAGAAGCTAAGAGGACGAGTTGGGACATCTGTAACAGTCAAACTCAGTGTCAA
ACTACCTCGCGAGTACATTAAGCTCTCACCGATTTCCAGTGCCATCATTCCACATAGAACACCGGACGGTCGATTAGCCAAGACTGGCTACGTGAAGCTG
TCAGCCTTCTCTCAGAGCGCTGCTACTGACATGGAAAATACAATCCAAGAGATGGAACGTCAAGATGTGCATTCATACATCCTCGATTTGCGCAATAACC
CTGGTGGTCTAGTGAAAGCAGGGCTTGACGTGGCGCAAATGTGGCTAGACGGGGACGAGACCCTTGTGAACACAATTGACAGAGAAGGGAACATGTTTCC
AATCAACATGGTCGATGGCCATGCCCTAACACACGATCCGCTGGTTGTGTTGGTGAATGAGGGAAGTGCTAGCGCAAGTGAGATATTAGCTGGAGCTTTG
CATGATAACGGGCGAGCCATCCTTGTGGGGCATAAAACTTTTGGAAAGGGCAAAATTCAGAGTGTGACAGAGTTGCACGATGGATCGGCCCTGTTTGTGA
CGGTAGCCAAGTACCTGTCTCCGGCACTCCACGACATCGATCAGATCGGGATCACCCCCGACGTGCAATGCACGACAGAGGAGGTGCTGAGGGAGTTTTC
CCAGACGAAGAACAACAGGGAGTCATCGTCGTCCCTAGAAGCCGATTCATGCATTATGGTTGCGGAACACGAACTCGAGGTCCAGGAGTCTAGAGGGACA
GCCTCGTGA
AA sequence
>Lus10040494 pacid=23174112 polypeptide=Lus10040494 locus=Lus10040494.g ID=Lus10040494.BGIv1.0 annot-version=v1.0
MDSLRRSPTSTSTIRTQSQRCLISEKKRWTMRFSNHASVNRTARRTVTASSYNGGGGKDRDESPMRKSIGKGVVGFAAAAATLAAVCCSEPPPASAESLT
VAFPVSRAREVNTVQRTLIEAWGLIRETFVDPTFNHQDWDLKLQQTMVEMFPLSSSDAAYKKISGMLSTLGDPFTRIISPKEYQSFRIGSDGNLQGVGVF
INLEPKTGHLVVLSCIEGGPAARAGIQEGDELIEIDGEQLHGVDSEVAAQKLRGRVGTSVTVKLSVKLPREYIKLSPISSAIIPHRTPDGRLAKTGYVKL
SAFSQSAATDMENTIQEMERQDVHSYILDLRNNPGGLVKAGLDVAQMWLDGDETLVNTIDREGNMFPINMVDGHALTHDPLVVLVNEGSASASEILAGAL
HDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYLSPALHDIDQIGITPDVQCTTEEVLREFSQTKNNRESSSSLEADSCIMVAEHELEVQESRGT
AS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G57680 Peptidase S41 family protein (... Lus10040494
[exp]
0 1
AT1G34060 Pyridoxal phosphate (PLP)-depe... Lus10028695
[exp]
2.2 0.9335
AT3G18430 Calcium-binding EF-hand family... Lus10029670
[exp]
3.7 0.8916
AT2G20610 RTY1, RTY, HLS3... SUPERROOT 1, ROOTY 1, ROOTY, H... Lus10018626
[exp]
6.9 0.8767
AT5G49740 ATFRO7, FRO7 ferric reduction oxidase 7 (.1... Lus10012160
[exp]
10.4 0.8738
AT1G61680 ATTPS14 terpene synthase 14 (.1.2) Lus10000231
[exp]
10.5 0.8690
AT5G14860 UDP-Glycosyltransferase superf... Lus10022222
[exp]
13.4 0.8662
AT5G10770 Eukaryotic aspartyl protease f... Lus10020100
[exp]
16.7 0.8659
AT3G18430 Calcium-binding EF-hand family... Lus10042708
[exp]
24.4 0.8615
AT2G36800 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5,... Lus10003323
[exp]
25.5 0.8520
AT1G52510 alpha/beta-Hydrolases superfam... Lus10025787
[exp]
26.5 0.8656

Lus10040494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.