Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31160 1150 / 0 DCAF1 DDB1-CUL4 associated factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012331 [exp] 1771 / 0 AT4G31160 1778 / 0.0 DDB1-CUL4 associated factor 1 (.1) Lus10006376 [exp] 1557 / 0 AT4G31160 1309 / 0.0 DDB1-CUL4 associated factor 1 (.1) Lus10006377 [exp] 400 / 3e-122 AT4G31160 484 / 1e-152 DDB1-CUL4 associated factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280200 [exp] 1495 / 0 AT4G31160 1723 / 0.0 DDB1-CUL4 associated factor 1 (.1) Potri.006G280600 [exp] 49 / 5e-05 AT4G20325 318 / 3e-105 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040495 pacid=23174013 polypeptide=Lus10040495 locus=Lus10040495.g ID=Lus10040495.BGIv1.0 annot-version=v1.0 ATGGACGGCGAATCGCCCATTACTAACGGAGAAATCTCTTCCGCCGAGGTAGCACCGACGCCGGCGGCGGCTCTGCTTCCTCTTCCACCTATATCGGAAG CGGGGGATGGACGTGAGGCCGGAGATGGACACAATGGCGATGAGGAGGAAACGAAGGAGGAGGACGATGACGAGTTGATTGACAAGGCGCAGCGGTTAAT GGAAAAGATTAGTGCCGCTCCTGAAAACCCTAGTGCTTCCGTTCTCCACGCTCTGTCTTCTCTCCTCGAAACTCAGGAGTCTCTATATGTCGAAGAGAAC GGACATTCTTGTCCTAATACTTCTCGTGCTTCCCACCATATTGGTCGTCTTGGAAACTTACCTCGGGGCAATGATGAGTTTTTTGACTTGGTATCTTCTA AGATTCTTGCTGAGACGAGATATTCAACTGCCGTCCAGGCAGCTGCTGCGAGGCTTCTTATGAGCTGCTCGCCAGCGTGGATTGAGAACGAGAATGATCC TCATGTTTTTGATGAACCCGTTATGGAGAACATAAAGGGCTGGCTGATGGATGAATCCGTGAGATGTTCTGGTGAAGAGCGCAATTGGAAACATGGTTCA AGGAGGAGAGAGGCAACAGATTCTGAGATGTTGAAGGCCTATTCTACGGGGCTCCTTGCTGTATGTATGGCCAGTAGTGAGAAGGTTATTGAAGATATTT CCAAAAAAAAGGCTGTTGAAAAGGTTGTTGAAGATGTGCTTACATCTGGATTGTCCGGAAAGCTCATGCGCTTTCTTCGAATCCGCACAGTGGGGGAAAC TAGCACAAGCAAAAAAGATGGTAGTTATTCTACTGAAGGGGAAAATGCAAATGCTGCCACATGCTACCAAGGTAGGGAACGCCAGCTTCTTGAGGCTACT CATGATAATTTGAAAGTGATGGATGAGAGGTCACTAGATTATCAGAGTGTCGATAGAAATGATGATAAAAGCTCTGGTGCTCAGCAATTGAGGGAAGATT TTGCTGATCTTGGAGTATTGTCTAATGTGTCAGCTGAAGCACAGAATTCTTCAGGAAGCCCAATTGCTGATGGTTTTACCTGGGAAAGAGAGGAAAACGA TGACTGCTTAAGTGAATGTAGAATTGGAACCAAAGACATATCCAATTTGGTAAAAAAAGCTGTGGGAGCTGCTGAAGCGGAAGCCAGAGCTGCAAATGCA CCTCCAGAAGCCATTAAGGCAGCTGGTGATGCTGCTGCTGAAGTTGTCAAGAGTGCTGCTTTTGAGGAATTTAAATCTACCAATAATGACGAGGCTGCAG TTTTGGCTGCTTCTCGTGTTGCTTTTACAGTGGTCGATGCCACAAATGCAGTTGAACGTTTTAGGAGAACTACCAGTGACGCCAATGATTCAGTGGATCT TGAAAGTACAGAGAAAGAAGCGAATGAGGAAACTGAAGAATATTTCATCCCTGATGTTGAATCCCTTGCACAGTTGAGGGAAAAATATTGCATACAATGC ATTGGGATATTAGGGGGATGTGTTGGAGTTCTTGGGCCTGTATTGCAGGAGGAGGGTGTAGATGTCTGTCTGTTGCTGTTGGAACGTAGTTCAAAAGGAG CATCCAAGGCTATGTCACTCTTGCCTGATGTCATGAAGCTTATATGTTCCTTAGGTGCTCACAGGAAGTTTGCTGAACTGTTTGTGTATAAAGACGGCAT GGAAAAACTGCTTGCTGTGCCACCAGTTGAACACACCTACTTTGGTCTTTCTTCATGCTTATTTACTATCGTTTCTGTAGAGGGAATAATGGAGCTTGTA TGTGCTCTTCCATCAGGTGTTGTCCCCCGGGTGGTTGGGTTAGCTATTCAACTTCTGGAGTGCTCCCAAGATCAAGCCAGGGAAAGTGCAGCCTTATTTT TTCGTGATGCCTTTGTATTTAGAGATGTGATTGATGCTTTCGATGAGCAACATGGTTTGCAGAAGTCACTTAGCCTTTTAAATAAAGCTGCTTCAGTTAG ATCTGGTGGCAATTCAGGGTCGTTAAACCTGTCTACTTCAGAGAAACAGACACCTTGCCACACTTGTTTTGCATTGCAACAATATGTCAGAGGACATTTT CATCTGCTTGTGGAATCAGTTCGTGCTAATAGAAACAACCGAAGTTTGGCTAGGAACCTACCAAGTGCAAGGGCTGCATACAAGCCTCTTGACTTGAGTA ATCAGGCTATGGATGCCATCCTTTTGCAATTACAGAAGGACCGGAAGTTGGGTCCCGCTTTTGCAAGAGCTAGTTTTCCTGCTGTCGACAAATTCTTAGA GTTGAATGGGCATATTACTATGTTGGAATTGTGTCAGGTTGGCAGAGCCCCACCCGTTGATTACTTGGTTCAGTTTGCTCTGGGTGTCCTTCATATTGTT ACATTGGTTAATGATGGCCGCAAAATGATAGTGAACGCTACCTTGAGCAATAATCGTGCTGGCATAGCTGTTATTCTGGATGCAGCATATGTTAGTGGTA CTGTTGTGAATCCTGAGGTAACGATAATGCCAGCATTAAAGGTGCTAATAAACCTTGTTCGTCCACCTCCTTCAATAAGCAACAAACCACCTCCACTTGG TGCTGGAAATATCCAAGATCGATCTTCTAATATCCCCAGCCACGGTGATCAAAGGGAGCGGAATGGTGAGTCAAGTGCAGCCGATCAAGTAGGACGGCGC TCAATTGGAAGTGCTACACAAGCATCTGTTAATCCTACAGCAACGTCGGGATTGGTCGGTGATAGAAGAATATCTTTACGTTTTGGAGCAGGTTTTGCAG GACTTGCTACACAGATGGAACAGGTATATACTCTGGCTAGAGAGGCTGTTAGTGGTGGTCTAATGGTGCTACTGCGTCTCCTCGAGCGACGCACGTATTC TCCTCCTGATGCCATTGACTGTGTCCGTGCACTTGCTTGCCGGGTGCTGATTGGCTTAGCTAGAGATGATAAAATTGCACACAACATTGTGGCCAAACTC CAGGACGGTAAAGCCCTATCAGAACTAATACGAGATTCAGGTGGCCAAACACCTGGAACCGAACAAAGCAGGTGGCAAGCCGAGCTTGCCCAGGTGGCGA TTGAGCTAATTGGGATTGTAACTAATTCTGGGCGGGCAAGCACACTGACCTGTACCGATGCGGCCACACCAACATTGCGGCGTATTGAAAGAGCTGCGAT AGCAGCAGCTACTCCTATCACGTATCATTCGAGGGAACTGTTGCTCCTCATTCATGAACACCTACAGGCGTCTGGTTTGGCCAAAGCTGCTGATGCACTC TTGGAAGACGCTCAGTTGACGCCTTCATCATCTTCTCTTGCTCCTCAGGAGACTCCTTTTGTGCAGCAGATTCAGTGGCCATCTGCCAGTGGGTTTCTAT CTGAAAAATCCAAAGCAACTGTACGGAATGAAGATGGCAATATCAGATGTAGAGATTCATCTGTGTCTGTCAAAAAGAAGCACATTTTGTTCTCACCTTC CTTTGGATCGCAGTCAAGAAGTCAGCCCCAGTCCATTGATTCTAAAAAGTCAAAGCAATATCAACCTCCTTCAGATATATTGGAAAAAGAAGAGCCTTTG TGCAAGACCCCAGCGAAACGCAAGCTATCAGATCTAAAGGATATTGACCTGGCTTCATCTGGAAAGCGACTCAATACTAGCAAGCACGAATTTCGCTCTC CGGTCTGTTCGACACCAGCTAATGCTTGCAAGATTGGTGATGGTTTAACTACACCTTTCTCTAACACGAGGGACATTGATACTAGGTCAACGCCATTCAG TTCTATAGATTATATAGGTGAAAGTCCCTGCCCTAGTTCTAGCAGCTCGGAGCGGTCAACATTAGACTCTATCGTGGTTCAGTATCTGAAGCAGCAACAT CGGCAGTGCCCAGCTCCTATAACAACTCTTCCACCACTCTCCTTGCTAGAACCACATGTTTGCCGAGAACCAAAAAGATGCCTTGATGCACCGTCAAATG TGACAGCTAGGATCGGCGGTTCACGCCAGTTTAGAAGTTTCTACGGTGGGGTCCACGGAAATCGCAAGGATCGACAATTCGTGTACAGCAGATTCAGACC GTGGAGAACTTGCAGGGATGATGCCGGTGCCCTGCTAACCTGCGTGACATTCCTCGGCAACTCTGGCCATGTTGCAGTTGGCACCCACGACGGGGAGCTT AAAATTTTCGATTCCGACAGCGGACATTTGTTGGAGAGCTGCGCAACTCACCAGGCTCCTCTGACTCTAGTTCAATCACATCTAGCCGGGGAGACCCAGT TGGTGCTATCTTCAAGTTGTAAGGATGTTTGTCTGTGGGATGCTTCTTCAATCTCTGGAGGTCCCATCCACACCCTGGAAGGCCGCAAAGCTGCAAAGTT CAGCAATTCCAGCGACCTATTTGCAACCCTAACGACAGACATCGTTTTACCGCAGCAGCGAAGAGAAATTCTGCTCTATGATGTCCAAACCTGCCAAGTA ACCTCGACTTTGTCGGATACGACTCCGAGTTCGACAGGTAGGGCCAATGTGTGTCCGCCGATACACTTTAGCCCTTGCGATACAATGCTACTTTGGAACG GTCTCTTGTGGGATCGACGCCAGCAGTCTGATCCTGTCCATCGCTTTGATAAGTTCACTGATTACGGAGGTGGCGGTTTTCATCCTGCGGGGAATGAGGT GATTATAAACTCAGAGGTGTGGGATCTGCGGAGGAAGTTCAAGCTTCTACGGAGTGTACCGTCGTTGGATCAAACGACGATAACCTTCAACGCACGGGGA GATGTGATCTACGCTATCCTGAGGAGAAACCTGGAGGACGTGATGTCGGCACTTCACACTCCTCGGCGCGTGAAGCATCCGCTGTTTCCAGCCTTCAGAA CGGTGGACGCCGTCAATTACTCAGAGATAGCGACTGTGCCGGTGGACCGATGTGTTCTCGATTTTGCATCGGAGCCGACAGATTCGTTTCTCGGGTTGAT CACCATGGATGATGACCAAGAGATGTTCTCGTCGGCTAGAGTTTACGAGATTGGTAGGCGGAGGCCTACTGATGACGACTCGGATCCTGATGATGCTGAA AGCGAGGTAGAGGACGAAGACGAAGACGACGATGATCCGATCTTGAGGTCGGATTTCGGAGGTGATGGTGATAGCGATGAGGATGGTGACTTGAGCAATG ATGATGATATTTATTTGGATGACAGCGACGATGAGGTTGATGGGGGCTTCGTGATGGACGGTGTGGAGTTTGGTGGCGGAGGTGGAATGATGGAGATGAT GACGGAGGGGGACGGCGAAGATGACGACGATGATGATGATGACGACGGCCACAGTCGAGTGTTGGAATGGGACAGTAGTGGGGAAGAGGACTTCATGCGG TAA
AA sequence Show only first row Show all	>Lus10040495 pacid=23174013 polypeptide=Lus10040495 locus=Lus10040495.g ID=Lus10040495.BGIv1.0 annot-version=v1.0 MDGESPITNGEISSAEVAPTPAAALLPLPPISEAGDGREAGDGHNGDEEETKEEDDDELIDKAQRLMEKISAAPENPSASVLHALSSLLETQESLYVEEN GHSCPNTSRASHHIGRLGNLPRGNDEFFDLVSSKILAETRYSTAVQAAAARLLMSCSPAWIENENDPHVFDEPVMENIKGWLMDESVRCSGEERNWKHGS RRREATDSEMLKAYSTGLLAVCMASSEKVIEDISKKKAVEKVVEDVLTSGLSGKLMRFLRIRTVGETSTSKKDGSYSTEGENANAATCYQGRERQLLEAT HDNLKVMDERSLDYQSVDRNDDKSSGAQQLREDFADLGVLSNVSAEAQNSSGSPIADGFTWEREENDDCLSECRIGTKDISNLVKKAVGAAEAEARAANA PPEAIKAAGDAAAEVVKSAAFEEFKSTNNDEAAVLAASRVAFTVVDATNAVERFRRTTSDANDSVDLESTEKEANEETEEYFIPDVESLAQLREKYCIQC IGILGGCVGVLGPVLQEEGVDVCLLLLERSSKGASKAMSLLPDVMKLICSLGAHRKFAELFVYKDGMEKLLAVPPVEHTYFGLSSCLFTIVSVEGIMELV CALPSGVVPRVVGLAIQLLECSQDQARESAALFFRDAFVFRDVIDAFDEQHGLQKSLSLLNKAASVRSGGNSGSLNLSTSEKQTPCHTCFALQQYVRGHF HLLVESVRANRNNRSLARNLPSARAAYKPLDLSNQAMDAILLQLQKDRKLGPAFARASFPAVDKFLELNGHITMLELCQVGRAPPVDYLVQFALGVLHIV TLVNDGRKMIVNATLSNNRAGIAVILDAAYVSGTVVNPEVTIMPALKVLINLVRPPPSISNKPPPLGAGNIQDRSSNIPSHGDQRERNGESSAADQVGRR SIGSATQASVNPTATSGLVGDRRISLRFGAGFAGLATQMEQVYTLAREAVSGGLMVLLRLLERRTYSPPDAIDCVRALACRVLIGLARDDKIAHNIVAKL QDGKALSELIRDSGGQTPGTEQSRWQAELAQVAIELIGIVTNSGRASTLTCTDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLAKAADAL LEDAQLTPSSSSLAPQETPFVQQIQWPSASGFLSEKSKATVRNEDGNIRCRDSSVSVKKKHILFSPSFGSQSRSQPQSIDSKKSKQYQPPSDILEKEEPL CKTPAKRKLSDLKDIDLASSGKRLNTSKHEFRSPVCSTPANACKIGDGLTTPFSNTRDIDTRSTPFSSIDYIGESPCPSSSSSERSTLDSIVVQYLKQQH RQCPAPITTLPPLSLLEPHVCREPKRCLDAPSNVTARIGGSRQFRSFYGGVHGNRKDRQFVYSRFRPWRTCRDDAGALLTCVTFLGNSGHVAVGTHDGEL KIFDSDSGHLLESCATHQAPLTLVQSHLAGETQLVLSSSCKDVCLWDASSISGGPIHTLEGRKAAKFSNSSDLFATLTTDIVLPQQRREILLYDVQTCQV TSTLSDTTPSSTGRANVCPPIHFSPCDTMLLWNGLLWDRRQQSDPVHRFDKFTDYGGGGFHPAGNEVIINSEVWDLRRKFKLLRSVPSLDQTTITFNARG DVIYAILRRNLEDVMSALHTPRRVKHPLFPAFRTVDAVNYSEIATVPVDRCVLDFASEPTDSFLGLITMDDDQEMFSSARVYEIGRRRPTDDDSDPDDAE SEVEDEDEDDDDPILRSDFGGDGDSDEDGDLSNDDDIYLDDSDDEVDGGFVMDGVEFGGGGGMMEMMTEGDGEDDDDDDDDDGHSRVLEWDSSGEEDFMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10040495 [exp]	0	1
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	7.4	0.7837
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	9.3	0.7663
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	17.4	0.7562
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	28.4	0.7495
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10026093 [exp]	32.6	0.7184
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10022373 [exp]	33.0	0.7373
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	37.8	0.7378
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10032510 [exp]	38.1	0.7217
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	45.2	0.7118
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	48.4	0.7118

Compare expression of checked genes

Lus10040495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.