Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09100 261 / 7e-83 mRNA capping enzyme family protein (.1.2) AT5G01290 242 / 1e-73 mRNA capping enzyme family protein (.1) AT5G28210 211 / 4e-62 mRNA capping enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027759 [exp] 404 / 1e-135 AT3G09100 795 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10035534 [exp] 313 / 2e-100 AT3G09100 770 / 0.0 mRNA capping enzyme family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110700 [exp] 308 / 2e-98 AT3G09100 914 / 0.0 mRNA capping enzyme family protein (.1.2) Potri.006G096000 [exp] 298 / 8e-95 AT3G09100 948 / 0.0 mRNA capping enzyme family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF03919 [flax] [poplar] mRNA_cap_C mRNA capping enzyme, C-terminal domain CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10040496 pacid=23173824 polypeptide=Lus10040496 locus=Lus10040496.g ID=Lus10040496.BGIv1.0 annot-version=v1.0 ATGGACTTGAATGCTTTACCGCTGCCTGAAGACAAGGAAGATAATTTTGTAAGGCACATAGAAGAATATTGTGCCAATGTGGAACGAGTAGAGACTTCTG TGCAGCTTGCACACCGGGAGCGGGGCGAGAGGCGCAAGAGTTTGAGAGCTGAGAGTAGTTTAGATGATAGACCCCGTCCTGCACCTCGGCAGCCAGTTCA CGATCAAACCAGACTACCTCCTGGATGGTTGGATTGCCCTCCGGCTGGTAAGGAGATATGCGGAATTGTTCCTTCTAAGGCACCTCTTGGTGAAATGTTC TACCAGGTTATTCCACCTGGTAAAAGAAGATATTCTTTCACGCAAGTGATTCATCTACAACGAGTTGCAGGAAGAACGGGGACGGATGCTGTGCCGGAGA ATGTGGCTGTAAATCAATTTGTGTATGAAGTGATGCAGAGTCAAAAACTTTCTAAGAAGTGTGTTCTTGTTCATTGCACACATGGGCACAACCGCACAGG ATACATGATTATTCATTTTTTGATGCGTACACAGTCGATGTCGGTCACAGAGGCGATAACTAAATTTTCTGAAGCACATCCTCCTGGAATCTACAAACCA GACTATATTGCTGCTCTATATGATTTCTACCATGAAAAGATGCCGGACAATATATGCCCTCCTATTCCAGAATGGAAGAAATCTCTTGAAGATGACGATG ATGATGGCGTTTCAGCTGCTCCTTCGAACGTATGTATGTTTCAGAACAATCGAGAAGTGGATGCCAAGTTAACAAATGATGATGTTTTGGGAGACGATAT ACCCATTGACCAGCTCTACAAACTGAGGCAGATCTGCTATGGCTTGCTAAAGATGAATATGCTGTGGAAGTACGCTGCGATGAACTCGGTTGACTTCTTA TTTGAGGTTGGTCGTGATGGTCAAAAATCATTGTATCTTGGTGCGAAGAAGATCAAACTAACGGATGGGAGCTCGGTGGTATTTCGAGATGATGATCCGT GCTTGTATTCCGGGAAGATCATAGAGTGTTCGTGTAACTTAGAGACGAAAGTCTGGGTGTTCATGCCGGTTCGCACCGATAAAAACACACCAAACGGGTG GAATACATACATAAAGGTGAAGAGAAGTATCGAAGACAACATAACAGACGATATCTTGGTGCGGGAAATCCACGAGATAATTAAGTTGCCGATGTATGAT GAAAGGATGAAGAAGGATAAGATGAGAATGATATGA
AA sequence Show only first row Show all	>Lus10040496 pacid=23173824 polypeptide=Lus10040496 locus=Lus10040496.g ID=Lus10040496.BGIv1.0 annot-version=v1.0 MDLNALPLPEDKEDNFVRHIEEYCANVERVETSVQLAHRERGERRKSLRAESSLDDRPRPAPRQPVHDQTRLPPGWLDCPPAGKEICGIVPSKAPLGEMF YQVIPPGKRRYSFTQVIHLQRVAGRTGTDAVPENVAVNQFVYEVMQSQKLSKKCVLVHCTHGHNRTGYMIIHFLMRTQSMSVTEAITKFSEAHPPGIYKP DYIAALYDFYHEKMPDNICPPIPEWKKSLEDDDDDGVSAAPSNVCMFQNNREVDAKLTNDDVLGDDIPIDQLYKLRQICYGLLKMNMLWKYAAMNSVDFL FEVGRDGQKSLYLGAKKIKLTDGSSVVFRDDDPCLYSGKIIECSCNLETKVWVFMPVRTDKNTPNGWNTYIKVKRSIEDNITDDILVREIHEIIKLPMYD ERMKKDKMRMI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	0	1
					Lus10009632 [exp]	3.2	0.9558
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	4.5	0.9502
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	4.9	0.9473
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	6.3	0.9453
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	7.4	0.9440
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10001235 [exp]	7.5	0.7955
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	8.1	0.9440
					Lus10000380 [exp]	8.8	0.9440
					Lus10010383 [exp]	9.4	0.9440
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	10.4	0.9347

Compare expression of checked genes

Lus10040496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.