Plant FIBer expression Database

Lus10040497 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33690 120 / 6e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011301
[exp]
278 / 1e-87 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1)
Lus10004941
[exp]
40 / 0.0007 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G082200
[exp]
160 / 1e-48 AT4G33690 127 / 2e-35 unknown protein
Potri.001G287900
[exp]
154 / 2e-45 AT4G33690 112 / 5e-29 unknown protein
PFAM info
Representative CDS sequence
>Lus10040497 pacid=23174158 polypeptide=Lus10040497 locus=Lus10040497.g ID=Lus10040497.BGIv1.0 annot-version=v1.0
ATGGATCTGGAGACGGAGAACAGAATAGCTGCAATGCTTATGAGAGAGGCAGCTGAGTTGAGGCGGCGGGCTGAGAAAGAAGGTGTTCGTGCCTATCTTG
AGAAACCTACTGTTAGAGTGCGACCGAACTCGCGATTCCTTACTGCAACTGTTCTTGGAGTGCAGCAAGCAAACCGAGTCGTGGAAGTTAATGAGATGTG
GCGAGTCCGTCAAAAAGAGACGAACTTGGACGAAAGGCTTAGTGATGGATCCAAAGGTGTGAAGAACAACAGATACACTAGTGAGTCCCATAAGAATGCC
AGTAAGAGGCTAGCTGTACATAGTGATGATGCTAGACCCTCATGCTCGTCAAGTAACAGAGTATCCGGAAGAAGCAGCAGCAGCTTGATCGAAGACGATG
GAGGATTGAAGGACGAAGAGATTGAGGAGTTTTTGCAGTCCAGGGCAAAGCGTGGTCGGGGCGCTGTTGGTTCGAGGATGGACGAAACAGGTCCATACCG
TCCTTCAGGGGAAGACACGGTGGATGCTCTCCCCACTAGCACTCTTAAATCTTGCCGTGCTGTCTTGGGTCCAGAGAAGCCATCTTCTCTGAAGTCTAGC
GATTCATCAGAAGACGAATCTGACGAGGACAGAAGGAAGAAGGCCAGGAGAATGAAGTCGGAACGGAAGCACAGTACGAAAGAGAAGTCGAGGGATAAGA
AACGGAAGAGGAAAGAAGAGAAGAGAAGGAAGAAACACCGATAG
AA sequence
>Lus10040497 pacid=23174158 polypeptide=Lus10040497 locus=Lus10040497.g ID=Lus10040497.BGIv1.0 annot-version=v1.0
MDLETENRIAAMLMREAAELRRRAEKEGVRAYLEKPTVRVRPNSRFLTATVLGVQQANRVVEVNEMWRVRQKETNLDERLSDGSKGVKNNRYTSESHKNA
SKRLAVHSDDARPSCSSSNRVSGRSSSSLIEDDGGLKDEEIEEFLQSRAKRGRGAVGSRMDETGPYRPSGEDTVDALPTSTLKSCRAVLGPEKPSSLKSS
DSSEDESDEDRRKKARRMKSERKHSTKEKSRDKKRKRKEEKRRKKHR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G33690 unknown protein Lus10040497
[exp]
0 1
AT2G01100 unknown protein Lus10015331
[exp]
3.2 0.9365
AT5G03455 ACR2, ARATH;CDC... ARSENATE REDUCTASE 2, Rhodanes... Lus10021515
[exp]
4.6 0.9364
AT5G03455 ACR2, ARATH;CDC... ARSENATE REDUCTASE 2, Rhodanes... Lus10022616
[exp]
6.6 0.9387
AT4G00620 EMB3127 EMBRYO DEFECTIVE 3127, Amino a... Lus10018843
[exp]
8.4 0.9332
AT4G17960 unknown protein Lus10000314
[exp]
8.5 0.9348
AT4G27130 Translation initiation factor ... Lus10015124
[exp]
10.4 0.9257
AT4G27130 Translation initiation factor ... Lus10027181
[exp]
10.7 0.9341
AT1G14740 Protein of unknown function (D... Lus10030769
[exp]
11.5 0.9268
AT4G30360 ATCNGC17 cyclic nucleotide-gated channe... Lus10023203
[exp]
12.0 0.9103
AT1G47480 alpha/beta-Hydrolases superfam... Lus10019880
[exp]
12.5 0.8841

Lus10040497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.