Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20860 475 / 6e-164 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 416 / 1e-138 ATNEK7 NIMA-related kinase 7 (.1.2) AT3G44200 427 / 3e-138 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT1G54510 400 / 8e-132 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G63280 398 / 9e-132 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G04810 398 / 3e-131 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 392 / 3e-129 ATNEK3 NIMA-related kinase 3 (.1) AT1G50240 153 / 1e-38 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G07980 145 / 3e-36 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT3G13530 143 / 2e-35 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011301 [exp] 1101 / 0 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10031834 [exp] 429 / 2e-145 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1) Lus10001783 [exp] 422 / 7e-141 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 420 / 4e-140 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10013338 [exp] 424 / 6e-137 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10042632 [exp] 410 / 6e-136 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10001857 [exp] 420 / 1e-135 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10015928 [exp] 376 / 1e-122 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 376 / 1e-122 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051900 [exp] 643 / 0 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 613 / 0 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G018700 [exp] 482 / 1e-164 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 477 / 9e-163 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.009G020100 [exp] 432 / 4e-140 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G218100 [exp] 432 / 5e-140 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.013G039000 [exp] 414 / 2e-137 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.002G049400 [exp] 412 / 1e-136 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.005G051600 [exp] 406 / 2e-133 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.019G052500 [exp] 151 / 5e-38 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040499 pacid=23173873 polypeptide=Lus10040499 locus=Lus10040499.g ID=Lus10040499.BGIv1.0 annot-version=v1.0 ATGGATTCAGAGGAAGCTGCTGCTAATAAGTCGTCGAAGATGGAAGATTACGAGGTCATTGAGCAGATTGGGAGATGTGGAGCTTTTGGTTCTGCTTTCC TTGTCCTCCACAAAGCTGAGAAAAAGAAGTATGTGCTGAAGAAGATCCGGCTGGCTAAGCAAACTGAGAAGTTCAAACGGACAGCTCACCAGGAGATGGA CCTCATTGCTAAGCTAAATCATCCTTACATTGTGGAGTATAAAGATTCTTGGGAGGAAAAGGGGAATTGTGTATGCATAGTGACTGGACATTGTGAAGGA GGAGACACGGCTGCGATTTTGAAAAAGGCTAGAGGAATAATCTTTCCGGAGGAGAAAGTATGCAAGTGGTTCACTCAGTTGTTACTAGCTGTGGATTACT TGCACTCGAACAGGGTCATTCACAGAGATCTGAAGTGCTCCAACATATTCCTTACCAAGGAGAATGACATCCGTCTAGGTGACTTTGGACTGGCCAAGCT ACTCGACACCAAAGAACTCGCTTCTTCTTCGGTTGTCGGAACTCCTAACTACATGTGTCCTGAACTCCTTGCTGACATACCTTACGGATACAAATCCGAC ATCTGGTCACTAGGATGCTGCATGTTCGAAATTGCTGCACATCAACCAGCGTTTAAAGCTCCTGATAAGGCTGGACTTATCAACAAAATAAACAGATCAC TCATCTCTCCTCTCCCAATCGTTTACTCGTCTTCGCTGAAGCAAATTATCAAAACCATGCTGAGGAAGAACCCAGAACACAGACCAACAGCTGCTGAACT TCTTAGGCACCCTCATCTGCAACCATATCTGCTTCGCTGTCGTAATGCATCTTCTGTTTTCCTTCCAATTATAAGCAACTCTCCCGAGAAATCAAGACGG AAATCTCTAACGAGAAGACTTAGTAGTGGTGGAGTCAACCGAGGCTCGTTCGAAAATGATCGCCCTTCCGAGAGAAGTAGCAACGTGGTACTACAGCGCA TTGATGACAATGCGACATCTACTTCCGGTGCAATTGATAACCCCGAAACGAAGCCCTCTGATTCCACTGTGGAAACATCCGATACGATTACTGGTCCAAA GGACAGCTCCACTGACTCCGAGACGAGCATCTGTGATTCTAGTGGTGTTCATCGAAAGAATGTCATTGATATTGAGTTTGCCTCGCGTCAATACGAAGAG GAACACAAGCCGGAAGTTGCTGAAAATTTTAACGAACCGGGCGACATCGAAACTAGTCCTGTAACTGAACTAGATGATCATAACTTGGAGGCTACTATTG AGAAGGTTCAGGTAGACAGAAAAGATGGCACAGAGGAAACTCCTGAACCTGCACGAATTCTCGAGGAAGAGACCAATGAAGCTTCTTCTCCTATAGAGTT ACAGCCACAACCTCTCACTGTACATGCAGAAGAAAGGGGTCATTTCAATAGTTTTTCGTCTGAAACTACCGATATTACTGTTGCTGATGATCACCCTCCA TCAGATGACTGCAAAAGTGGACCGAAACTGGAGAAGGGAATGGAGATCGCGATCGTGGAGAAAGACAATGCTGCTGCTGCCAACGCTGATGAAGAAGAGC TACTGCCAGCTAACCACATTTCGTTGCTACGAACGCTGGCAGCGATAAACGAGCAGACGAACAAGCAGCAAGGGGTTCCGACCCAGCAAAGGGCTGACGC GCTGGAGTCGTTGCTCGAGCTATGCGCAAGGCTGCTTAAGCAGGATAAAATTGACGATCTTGCTGGCGTGCTGAGGCCATTCGGGGAGGAGACCGTATCG TCTAGGGAAACAGCTATCTGGCTCACAAAGAGCCTTCTGTCTCAACACAAGTACAATGGTGAAGGCTCCTAA
AA sequence Show only first row Show all	>Lus10040499 pacid=23173873 polypeptide=Lus10040499 locus=Lus10040499.g ID=Lus10040499.BGIv1.0 annot-version=v1.0 MDSEEAAANKSSKMEDYEVIEQIGRCGAFGSAFLVLHKAEKKKYVLKKIRLAKQTEKFKRTAHQEMDLIAKLNHPYIVEYKDSWEEKGNCVCIVTGHCEG GDTAAILKKARGIIFPEEKVCKWFTQLLLAVDYLHSNRVIHRDLKCSNIFLTKENDIRLGDFGLAKLLDTKELASSSVVGTPNYMCPELLADIPYGYKSD IWSLGCCMFEIAAHQPAFKAPDKAGLINKINRSLISPLPIVYSSSLKQIIKTMLRKNPEHRPTAAELLRHPHLQPYLLRCRNASSVFLPIISNSPEKSRR KSLTRRLSSGGVNRGSFENDRPSERSSNVVLQRIDDNATSTSGAIDNPETKPSDSTVETSDTITGPKDSSTDSETSICDSSGVHRKNVIDIEFASRQYEE EHKPEVAENFNEPGDIETSPVTELDDHNLEATIEKVQVDRKDGTEETPEPARILEEETNEASSPIELQPQPLTVHAEERGHFNSFSSETTDITVADDHPP SDDCKSGPKLEKGMEIAIVEKDNAAAANADEEELLPANHISLLRTLAAINEQTNKQQGVPTQQRADALESLLELCARLLKQDKIDDLAGVLRPFGEETVS SRETAIWLTKSLLSQHKYNGEGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	0	1
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022838 [exp]	1.7	0.9494
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	5.5	0.9441
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	7.1	0.9463
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	11.0	0.9172
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	12.4	0.9386
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	15.2	0.9234
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	15.5	0.9238
AT5G15080			Protein kinase superfamily pro...		Lus10005255 [exp]	15.5	0.8935
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	19.0	0.9377
AT1G44770			unknown protein		Lus10014131 [exp]	19.1	0.9426

Compare expression of checked genes

Lus10040499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.