Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06940 914 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G28440 447 / 4e-142 HSL1 HAESA-like 1 (.1) AT4G28650 434 / 7e-137 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G49660 419 / 1e-131 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65710 416 / 2e-130 HSL2 HAESA-like 2 (.1) AT4G28490 410 / 5e-128 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 410 / 3e-127 Leucine-rich repeat protein kinase family protein (.1) AT5G65700 406 / 2e-126 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G09970 397 / 1e-123 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G08590 397 / 5e-123 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011302 [exp] 1563 / 0 AT5G06940 984 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10013968 [exp] 439 / 1e-138 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 437 / 3e-138 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10027951 [exp] 426 / 5e-134 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 423 / 7e-133 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 417 / 7e-131 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10039872 [exp] 405 / 2e-128 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10019248 [exp] 407 / 1e-126 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10018636 [exp] 404 / 1e-125 AT1G28440 1203 / 0.0 HAESA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051600 [exp] 1150 / 0 AT5G06940 978 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.006G056600 [exp] 1139 / 0 AT5G06940 888 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 449 / 1e-142 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G049100 [exp] 448 / 2e-142 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 441 / 9e-140 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.019G021700 [exp] 430 / 2e-135 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 422 / 1e-132 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G135400 [exp] 417 / 2e-130 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.002G111700 [exp] 414 / 2e-129 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.017G016600 [exp] 410 / 4e-128 AT1G28440 1130 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040500 pacid=23173917 polypeptide=Lus10040500 locus=Lus10040500.g ID=Lus10040500.BGIv1.0 annot-version=v1.0 ATGGCTGCCAAAACCCAAACCCACATCTCCATCTTCCTCCTTACCTTCACATTCGTTGCTCTCACTTCATCTTCAACCGACACAGAAACCCTTCTAACCT TCAAGAGCTCCATTCAAGATTCAAGCAACTCCTTGTCAAGTTGGTCCAACAACTCAAAGGATCATCACTGTAACTGGACAGGAGTAACCTGTTCATCAAC TCTCTCAGTAACTTCCCTAAACCTCCAGAGCTTGAATCTCTCAGGAGAAATCTCTGCCTCCATATGTGAACTTAGAAACTTGACTGTTCTCAACTTGGCT GACAATCTCTTCAACCAGCCTATCCCACTTCACCTCTCAGCTTGCAGCTCTTTGGAGACACTGAATCTGAGCAACAACCTGATTTGGGGCACGATTCCTG ATCAGATTTCTCAGTTCCAGTCCTTGAAAGTATTGGATTTGAGCAGGAATCATATCGAAGGAAGGATTCCGGATGGTTTGGGAGGGTTGACGAGCTTGCA GGTGCTTAATTTGGGTAGCAACTTGCTTTCTGGTAATGCACATAAGGTGTTCGACAATTTGACTGAACTAACTTTGCTTGACTTGTCTGAGAATCCTTAC TTGGTGAGTGAGATCCCTGCTGGCCTTGGGAAGCTCGAGAAGCTTGAGCAGATTCTGCTGCAGAACTCCGGGTTTTACGGTCAGGTTCCTGATTCATTTG TTGGGTTGAAAAGTTTGGTCATTTTGGATTTGTCACAGAACAATTTAAGTGGTGTGTTTCCTCAGAAGTTTGGTTCTTCTTCTCTGGAGAATCTTGTTTC CTTTGATGTCTCGCAGAATAAGCTTGTGGGTTCATTTCCAGAAGGTTTGTGTAATAATGCCAAAGGGCTGGTTAGTCTTAGTTTGCATACCAATTTTTTT AGTGGGGTATTACCAGCTACTTCCATTGATAAATGCTTGAACTTGGAGAGGTTTCAAGTTCAGAACAATGGCTTCTCTGGCGATTTCCCAGATGGGTTAT GGTCATCTAGCAAGATCAAACTGATTAGAGCTGAAAACAACAGGTTCGAAGGGAGGATACCGGACTCGATATCGAATGCTGCTCAACTTGAGCAAGTTCA GATAGATAACAACATGCTGAGCAGCGAGATTCCTGGCGGGATCGGGTTGGTCAAGACGTTATATAGATTCTCAGCATCTCAGAATCGTCTATATGGCGAA TTGCCCTCAAGTTTTTGCGACTCTCCTGTGATGAGCATCATGAACCTCTCCCACAATTCTCTATCTGGCACCATTCCACAGCTCAAGAACTGCAGGAAGC TAGTTTCGTTGTCACTGGCTGAGAACAGTTTCAATGGAGAAATCCCGGATTCCCTTGCTAATCTGGCCGTGCTTACTTATCTCGATCTTTCGCACAACAA TCTCACAGGCTCCATCCCTCAGGGGCTTCAGAACTTGAAGCTTGCTCTCTTTAACGTGTCGTATAACCAGTTATCCGGTCGAGTTCCTTTAGCTCTCATT TCGGGCCTCCCGGCTTCTTTCATGGAAGGAAACCCTGGCCTATGTGGCCCTGGATTGCCTAGCTCATGTCCAGATGAGCTTCCAGTTCGCCACCATCGTA ACGGTCCTAATGCATTGGCATTTGCTCTAATAACGGTTGCATTTGTCGTTATGGTTTTGCTTGTTACAGCTGGATTCTTCGCTTTCCGTCGATCTAGTTC TCGGTGGAAGCTTCAGGCTGCAGGTGGTTGGCATTCAGTGTTCTTCTACCCTCTGAGGGTCACTGAGCACGATTTGATCGTGGCAATGAACGAGAAGAGC GCGAGGGGAAGTTGCGATGGAGGAGCATTCGGTAGAGTGTATGCTATAACTCTACCTAGTGGTGAGCGTGTTGCTGTAAAGAAGCTAGTGAAGATTGGTA GCCAGTCATCAAAGTCACTCAAGGGTGAAGTGAAGACATTGGCCAAGATCAGACACAAGAACATTGTCAAAGTTCTTGGCTTTTGTCATTCTAATGAATC CATCTTTCTGATCTATGAGTACTTGGAGAAGGGAAGCTTAGGGGATTTGATTCGTGGGGACCCGGGTTTTGAGCTGCAGTGGAGTTCAAGGCTGAGGATT GCCATTGGAGTTGCTCAAGGGCTAGCTTACCTCCACAGGGACTATGTACCACACTTGCTACATAGAAATGTCAGGTCCAACAACATTCTTCTGGATGCTG ATCATGAACCAAAGCTCACAGATTTCGGTCTCGACAGAGTCGTGGGAGAGCCGGCGTTCCAATCGACCATAGCTTCGGAATGTGCCTCTTCTTGCTACAA TCCTCCTGAATATGGATACAGCAAGAAAGCGACTGAGCAAATGGACGTATACAGCTACGGAGTGGTGCTACTAGAGCTAGTAACCGGAAGACAAGCCGAG CAAGCAGAACGCTCTGGCGAGGGATCGATCGATATCCTGACATGGGTCCGAAGGAAAATCAACATAGCTAACGGAGCAACCCAAGTTCTGGACCCAAAGA TATCGAGCTCCTCGCAGCAAGAGATGCTGGCAGCTCTAGACATTGCACTTCGATGCACCTCCGTGATGCCCGAGAAAAGGCCATCCATGTGCGAGGTTGT TCGAGCGTTGCAGTCCCTGAACACGACTACGAGGACGCTCTGCTATGTTCGTGAAAATGCGGAATTTGATGAGGAACATCATGTGCCTGCAGTTTGA
AA sequence Show only first row Show all	>Lus10040500 pacid=23173917 polypeptide=Lus10040500 locus=Lus10040500.g ID=Lus10040500.BGIv1.0 annot-version=v1.0 MAAKTQTHISIFLLTFTFVALTSSSTDTETLLTFKSSIQDSSNSLSSWSNNSKDHHCNWTGVTCSSTLSVTSLNLQSLNLSGEISASICELRNLTVLNLA DNLFNQPIPLHLSACSSLETLNLSNNLIWGTIPDQISQFQSLKVLDLSRNHIEGRIPDGLGGLTSLQVLNLGSNLLSGNAHKVFDNLTELTLLDLSENPY LVSEIPAGLGKLEKLEQILLQNSGFYGQVPDSFVGLKSLVILDLSQNNLSGVFPQKFGSSSLENLVSFDVSQNKLVGSFPEGLCNNAKGLVSLSLHTNFF SGVLPATSIDKCLNLERFQVQNNGFSGDFPDGLWSSSKIKLIRAENNRFEGRIPDSISNAAQLEQVQIDNNMLSSEIPGGIGLVKTLYRFSASQNRLYGE LPSSFCDSPVMSIMNLSHNSLSGTIPQLKNCRKLVSLSLAENSFNGEIPDSLANLAVLTYLDLSHNNLTGSIPQGLQNLKLALFNVSYNQLSGRVPLALI SGLPASFMEGNPGLCGPGLPSSCPDELPVRHHRNGPNALAFALITVAFVVMVLLVTAGFFAFRRSSSRWKLQAAGGWHSVFFYPLRVTEHDLIVAMNEKS ARGSCDGGAFGRVYAITLPSGERVAVKKLVKIGSQSSKSLKGEVKTLAKIRHKNIVKVLGFCHSNESIFLIYEYLEKGSLGDLIRGDPGFELQWSSRLRI AIGVAQGLAYLHRDYVPHLLHRNVRSNNILLDADHEPKLTDFGLDRVVGEPAFQSTIASECASSCYNPPEYGYSKKATEQMDVYSYGVVLLELVTGRQAE QAERSGEGSIDILTWVRRKINIANGATQVLDPKISSSSQQEMLAALDIALRCTSVMPEKRPSMCEVVRALQSLNTTTRTLCYVRENAEFDEEHHVPAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06940			Leucine-rich repeat receptor-l...		Lus10040500 [exp]	0	1
AT4G19670			RING/U-box superfamily protein...		Lus10040616 [exp]	1.0	0.9520
AT5G06940			Leucine-rich repeat receptor-l...		Lus10011302 [exp]	1.4	0.9345
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	9.5	0.8995
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10024850 [exp]	12.8	0.8529
AT3G06035			Glycoprotein membrane precurso...		Lus10010516 [exp]	14.4	0.8948
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	14.8	0.9165
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	15.1	0.9220
AT3G20898			unknown protein		Lus10040827 [exp]	15.2	0.8754
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	15.7	0.9094
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10003348 [exp]	17.0	0.9179

Compare expression of checked genes

Lus10040500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.