Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51190 120 / 7e-32 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 119 / 7e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G20840 119 / 4e-31 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 119 / 4e-31 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 113 / 5e-29 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT4G37750 112 / 8e-29 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G65510 94 / 3e-22 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT4G36920 90 / 7e-21 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 89 / 1e-20 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G10510 89 / 2e-20 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011303 [exp] 264 / 3e-87 AT5G17430 103 / 2e-23 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 118 / 8e-32 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 119 / 3e-31 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 117 / 2e-30 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 117 / 2e-30 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 116 / 3e-30 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10013268 [exp] 105 / 4e-27 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10008939 [exp] 107 / 6e-27 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10036719 [exp] 106 / 7e-27 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018400 [exp] 122 / 3e-32 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 120 / 1e-31 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 120 / 1e-31 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 120 / 1e-31 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G064700 [exp] 120 / 2e-31 AT1G72570 350 / 1e-114 Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 120 / 2e-31 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 120 / 2e-31 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 119 / 3e-31 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 116 / 3e-30 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G007400 [exp] 115 / 1e-29 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040501 pacid=23174026 polypeptide=Lus10040501 locus=Lus10040501.g ID=Lus10040501.BGIv1.0 annot-version=v1.0 ATGTTGGAATTTGCAGGAGGATTTGCTGATGTTGTCATGGCTGCTAGATCTCGTGACTTGCTTGCTCTCAAGATTTTCGGGACATCTATCGCCTTGAATT TTCCTGTCACAGATTATAAAAAGGAATTGGAGGAGATGAATAACATGTCCAAAGATGAATATATAAAGTCACTCAAGAAGTTGACTAGATCAAACACCAG GCGTGTCTCCCAGTATCGAGGAGTAACCTTCAAAAGGCCTGCAGATGATAACCCTCAGAAGATCAGGTGGGAGGCGAAACTCGAAAAAGCAAAAGACTTC CCTGCACTTCCCCTTGGAAGATTCGAGACTGAAAAAGAGGCTGCAAGGGCCTATGACATAGCTGCAATCAAGGTCAATGGAAAGAAGGCAACCACCAACT TCGGCATCGAACACTACCATGTCAATCGGATCATCGACAGCATGAGTATGACCGGGTACAAATACTGGGCGAACAAAGTTCTTCTGCGAACCTGCTTTAA AAACCGGGCTAATTCTCCAGCCGATTTCGCTGAAGATCAGCCTCAGGCTCAGGATGCTGTTGCTGCTCCTGATAATGCAGCAGGGGAAGGAAGCTCTGGA GCCATGTCTATGTAA
AA sequence Show only first row Show all	>Lus10040501 pacid=23174026 polypeptide=Lus10040501 locus=Lus10040501.g ID=Lus10040501.BGIv1.0 annot-version=v1.0 MLEFAGGFADVVMAARSRDLLALKIFGTSIALNFPVTDYKKELEEMNNMSKDEYIKSLKKLTRSNTRRVSQYRGVTFKRPADDNPQKIRWEAKLEKAKDF PALPLGRFETEKEAARAYDIAAIKVNGKKATTNFGIEHYHVNRIIDSMSMTGYKYWANKVLLRTCFKNRANSPADFAEDQPQAQDAVAAPDNAAGEGSSG AMSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10040501 [exp]	0	1
					Lus10025477 [exp]	1.0	0.9996
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033364 [exp]	1.4	0.9982
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	11.0	0.9831
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	12.8	0.9822
AT2G15220			Plant basic secretory protein ...		Lus10026576 [exp]	13.7	0.8606
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	14.3	0.9822
AT3G50150			Plant protein of unknown funct...		Lus10005799 [exp]	15.7	0.9822
					Lus10024141 [exp]	16.9	0.9822
AT3G13445		TFIID-1, TBP1	TRANSCRIPTION FACTOR IID-1, TA...		Lus10031531 [exp]	18.1	0.9822
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	19.2	0.9822

Compare expression of checked genes

Lus10040501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.