Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42320 619 / 0 nucleolar protein gar2-related (.1.2) AT3G57780 565 / 0 unknown protein AT3G01810 452 / 1e-146 unknown protein AT5G06930 440 / 2e-144 unknown protein AT5G43230 421 / 1e-135 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011304 [exp] 1278 / 0 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2) Lus10041590 [exp] 465 / 7e-151 AT3G01810 603 / 0.0 unknown protein Lus10037001 [exp] 466 / 2e-150 AT3G01810 583 / 0.0 unknown protein Lus10022341 [exp] 446 / 1e-143 AT3G01810 605 / 0.0 unknown protein Lus10015804 [exp] 317 / 6e-102 AT5G43230 371 / 2e-122 unknown protein Lus10015805 [exp] 91 / 2e-18 AT3G01810 160 / 5e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G056800 [exp] 818 / 0 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2) Potri.016G051500 [exp] 793 / 0 AT2G42320 645 / 0.0 nucleolar protein gar2-related (.1.2) Potri.010G057700 [exp] 478 / 1e-157 AT5G43230 560 / 0.0 unknown protein Potri.008G177500 [exp] 469 / 1e-151 AT5G43230 565 / 0.0 unknown protein Potri.001G333200 [exp] 468 / 1e-151 AT3G01810 652 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040502 pacid=23174138 polypeptide=Lus10040502 locus=Lus10040502.g ID=Lus10040502.BGIv1.0 annot-version=v1.0 ATGAAACAGCCAGACAAGAGGAGAACACCAAACACTACAGAGTCGAAACGTGGTGCGAGAACTGAAAGCAAAGGCCGCAACAGGCAAGTTGGAGCCAGAG CTTTACATGTGAAGCCAGACTCCAGTGCTGTAGTAGTAAGTGATTCGAATGCGAGATCGGAGCCCTCGGAGGTTTATGAAAATGTTGTTATACACTATGT GGATGATGTCAACAGGTCTGATCAGGTAGCACCACCAAACAGTGCAAAATCCAAGGGGAATATGGGTTTAGGTGATAGTGATGTCGAGAGAGAACAAAAG CTCGTCCTTGGTAAGGAAGAAGAATCGGATTCAGTGTCGTCCCACGGTGGGGATTCGGTCATAGGTGACGATGAGAGAGTAGAACAAGTTACTAGAGTTC CTAAGAAAGCTTCGAAAGAGACTGGTTCTCGTGGTGGGTCTAGAATATGGGATAGGGAAGCTGGTAAACCAGTAGCTAAAGCAATGAGCAACAACAACAC CAAGAAACCTGCAACCATCTCGAGTAATGGAGCATCTAAGGTTTCTACCAAGATTGCTAAGGAGGTTAGAGATCTCCCAGTTGAAACTTGTGAAGGGGGT GAAGATATGGTCGTTGATGACGGTAAAGAGGTTGAGGTGTTTGAGGAGGCCTCGAACGCTACTACACAAAGTGTTGCGAGCGACGGCGAAACGATTGATG TTGAGGAAACTGGTGATGGCAGCACAGTCGTAAACCAAAGGATCAAAGAAATGGAGTTGAAAATTGAGAAACTTGAAGCAGAACTGAGAGAAGTTGCTGC CCTTGAGATCTCGCTATATTCTGTTGTACCTGAACATGGTAGCTCGGCACATAAGGTGCACACACCTGCTCGCCGTCTTTCGAGACTCTACATCCATGCG GGCAAGCATTGGACCCTGGATAGACGAGCCACCATTGCTAAGAACACCGTGTCAGGGCTGGTACTGATATCTAAATCATGCGGAACTGATGTTCCAAGGT TATCGTTCTGGCTGTCGAACACAATCGTGCTGAGGGAGATCATTTCCCAGGCGTTTGGTAGTTCTTGTAACTCTAGTATATCAAGGTTGATGAAGAGGAA ACAAGGTAGTAGTGGATGTTCACAGTTTGCTGAGGACTGGCAGGAGACTGGAACCTTCACTGATGCCCTGGAGAAAGTTGAATCGTGGATTTTCTCACGA ATCGTTGAGTCAGTCTGGTGGCAGGCCTTGACTCCACATATGCAACCCCCAAAGAAGGACTTGTCGGCGAATAAAAGTAGTTCGAGGCTACTTGGACCGG CACTCGGAGATCAGCAGCAAGGCAACTTCGCCATCAACCTATGGAAAAATGCTTTCCAAGATGCGTTTCGACGAATCTGTCCAGTTAGAGCTGGAGGGCA TGAGTGCGGCTGTTTGCCTGTTGTAGCTAAAATGGTTATGGAGCAGTGTGTTGACAGACTGGATGTAGCAATGTTCAATGCAATTCTACGAGAGTCGGCA AATGAGATCCCAACTGATCCTGTATCAGACCCGATTGTAGATTCCAGGGTTCTTCCTATACCAGCGGGAGACTTGAGCTTTGGCTCTGGAGCACAACTAA AGAATTCTGTTGGGAACTGGTCGAGATGGCTCTCGGATGCAGTGGGCATCGATGATGAGGAGATTTTTGAGAACGATGATGATGATAGACAATACACGAA ACCCAAGTGCTTCAATCTGCTTAACGACTTGAGTGATCTTCTTATGCTTCCAAAAGACTTTCTAGCTGACAGATCAGTGAGGAAAGAGGTTTGCCCGTCA ATTGGTCTTCCATTGGTGAAGCGGATACTCTGCAATTTTACTCCAGACGAGTTCTGTCCTGATGCTGTCCCTGGTGCTGTACTGGAGGCCTTGAATGCTG ATAGCATCGTGGAGCGCAAGCTTTCAGGTGAATCCACGCGGAGCTTCCCTTACTCGGCTGCATCAGTCTTCTACATGCCACCTTCTTGCGACGCAGTATC GGAGAAAGTTGCAGAGGCTGGCGCCAAATCTCAGCTATCAAGAAATGCCTCGGTTGTACAGAGGAAAGGATACACTAGCGATGATGAGCTGGAAGAACTG GATTCTCCTCTCGTCTCCTTACTCGAGAAGTCGCGACCATCTGTAACAAATGGAAACGGGAAGCACAGCGAGCCCAAGGTTACTTCGAATGCACGGTACC AACTTCTTCGAGAGGTCTGGTCTGGCTGA
AA sequence Show only first row Show all	>Lus10040502 pacid=23174138 polypeptide=Lus10040502 locus=Lus10040502.g ID=Lus10040502.BGIv1.0 annot-version=v1.0 MKQPDKRRTPNTTESKRGARTESKGRNRQVGARALHVKPDSSAVVVSDSNARSEPSEVYENVVIHYVDDVNRSDQVAPPNSAKSKGNMGLGDSDVEREQK LVLGKEEESDSVSSHGGDSVIGDDERVEQVTRVPKKASKETGSRGGSRIWDREAGKPVAKAMSNNNTKKPATISSNGASKVSTKIAKEVRDLPVETCEGG EDMVVDDGKEVEVFEEASNATTQSVASDGETIDVEETGDGSTVVNQRIKEMELKIEKLEAELREVAALEISLYSVVPEHGSSAHKVHTPARRLSRLYIHA GKHWTLDRRATIAKNTVSGLVLISKSCGTDVPRLSFWLSNTIVLREIISQAFGSSCNSSISRLMKRKQGSSGCSQFAEDWQETGTFTDALEKVESWIFSR IVESVWWQALTPHMQPPKKDLSANKSSSRLLGPALGDQQQGNFAINLWKNAFQDAFRRICPVRAGGHECGCLPVVAKMVMEQCVDRLDVAMFNAILRESA NEIPTDPVSDPIVDSRVLPIPAGDLSFGSGAQLKNSVGNWSRWLSDAVGIDDEEIFENDDDDRQYTKPKCFNLLNDLSDLLMLPKDFLADRSVRKEVCPS IGLPLVKRILCNFTPDEFCPDAVPGAVLEALNADSIVERKLSGESTRSFPYSAASVFYMPPSCDAVSEKVAEAGAKSQLSRNASVVQRKGYTSDDELEEL DSPLVSLLEKSRPSVTNGNGKHSEPKVTSNARYQLLREVWSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	0	1
AT1G10790			unknown protein		Lus10022968 [exp]	2.4	0.8771
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10023286 [exp]	2.8	0.8529
AT1G68330			unknown protein		Lus10034341 [exp]	3.5	0.8438
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	4.5	0.8687
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	4.5	0.8307
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10001192 [exp]	5.5	0.8202
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	6.7	0.8450
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	10.2	0.8388
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	11.2	0.8675
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	12.0	0.7997

Compare expression of checked genes

Lus10040502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.