Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13110 434 / 4e-153 SAT-M, SAT-A, SAT3, SAT-1, AtSerat2;2 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) AT1G55920 423 / 6e-150 SAT5, SAT1, AtSerat2;1 SERINE ACETYLTRANSFERASE 5, SERINE ACETYLTRANSFERASE 1, serine acetyltransferase 2;1 (.1) AT5G56760 336 / 2e-115 SAT-52, AtSerat1;1, SAT5 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) AT4G35640 273 / 4e-90 ATSERAT3;2 serine acetyltransferase 3;2 (.1) AT2G17640 254 / 4e-83 SAT-106, AtSerat3;1 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016603 [exp] 581 / 0 AT3G13110 430 / 2e-151 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10032686 [exp] 330 / 2e-113 AT5G56760 481 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10008567 [exp] 328 / 1e-112 AT5G56760 482 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10010679 [exp] 275 / 5e-91 AT4G35640 448 / 6e-159 serine acetyltransferase 3;2 (.1) Lus10007424 [exp] 160 / 1e-46 AT4G35640 294 / 4e-98 serine acetyltransferase 3;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365500 [exp] 429 / 8e-152 AT3G13110 402 / 3e-140 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Potri.013G109500 [exp] 342 / 4e-118 AT5G56760 419 / 1e-148 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.015G147000 [exp] 334 / 5e-115 AT5G56760 420 / 5e-149 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.005G099700 [exp] 140 / 4e-40 AT4G35640 280 / 2e-94 serine acetyltransferase 3;2 (.1) Potri.011G068001 [exp] 105 / 2e-27 AT2G17640 134 / 6e-39 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06426 [flax] [poplar] SATase_N Serine acetyltransferase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10040503 pacid=23174202 polypeptide=Lus10040503 locus=Lus10040503.g ID=Lus10040503.BGIv1.0 annot-version=v1.0 ATGGCGCCTTGCCTCGATACTTGCGCCACCACCACCGACGATAGCCCGATCAAGGATTACGCCCGCCACCACCAGCCAAGGTATGCCCGGTTGTACAAAC ACAAAGTTCCTTCCTTTGTTAGGAATCTCCACACTACTCCAATTCTTAATCTCTGGGCGACAATGGTAGAGGAAGCTAAGGTGGATCTGGAGCAGGAACG GGTTCTTTCCGGGTACTATTACACCTCCATCCTCTCCCAGAAATCTCTAGAGACGGCTCTTGCAAACCATCTGGCTGTGAAATTGAGCAATTCCAGCCTC CCGATCGCTACCTTATTCGACATCTTCGCCGATGTGCTGGATAAGAACCCTGCCGCGGTTCGGGCGGTGAAGGCCGATTTGCAGGCCGTGAAAGAACGGG ACCCGGCCTGCATAAGCTACGTCCACTGTTTCCTCAGCTTCAAAGGGTTTCTGGCCATTCAGGCTCACCGGATCGCCCACGAGCTGTGGCGGAAGGAGCG CAAGTCTCTGGCCCTGATGATCCAGAACAGAGTCTCGGAAGTTTTCGGGGCGGATATCCATCCCGGAGCCCGAATCGGAAAGGGGGTCCTGCTCGACCAC GCCACCGGAGTTGTGATCGGGGAGACTGCGGTTGTCGGGGACGACGTGTCGATTCTGCACAGCGTGACGCTGGGTGGGACAGGGAAGATGGGTGGGGACC GCCACCCTAAGATTGGAGATGGGGTTTTGATCGGAGCAGGGACTTGCGTGCTGGGGAACATTAGGGTGGGTGAAGGTGCCAAGATCGGGGCTTGTTCGGT GGTTTTGAAGGATGTTCCGGCGAGGACGACGGCTGTCGGCAATCCGGCGAGGCTGCTTGGTGGCAAGGATAACCCAACTAAGCTTGATAAAATCCCCAGC CTTACAATGGACCATACTTCGCACATTGCTGAGTGGTCCGATTATGTTATTTAG
AA sequence Show only first row Show all	>Lus10040503 pacid=23174202 polypeptide=Lus10040503 locus=Lus10040503.g ID=Lus10040503.BGIv1.0 annot-version=v1.0 MAPCLDTCATTTDDSPIKDYARHHQPRYARLYKHKVPSFVRNLHTTPILNLWATMVEEAKVDLEQERVLSGYYYTSILSQKSLETALANHLAVKLSNSSL PIATLFDIFADVLDKNPAAVRAVKADLQAVKERDPACISYVHCFLSFKGFLAIQAHRIAHELWRKERKSLALMIQNRVSEVFGADIHPGARIGKGVLLDH ATGVVIGETAVVGDDVSILHSVTLGGTGKMGGDRHPKIGDGVLIGAGTCVLGNIRVGEGAKIGACSVVLKDVPARTTAVGNPARLLGGKDNPTKLDKIPS LTMDHTSHIAEWSDYVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	0	1
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10042736 [exp]	1.4	0.8833
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	4.5	0.8715
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	4.9	0.8635
AT4G40042			Microsomal signal peptidase 12...		Lus10011365 [exp]	4.9	0.8458
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	5.0	0.8508
AT2G35390			Phosphoribosyltransferase fami...		Lus10030948 [exp]	5.3	0.8162
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	6.2	0.8314
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	6.3	0.8298
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	7.0	0.8503
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	7.3	0.8507

Compare expression of checked genes

Lus10040503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.