Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13770 904 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46790 493 / 2e-167 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 483 / 2e-163 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 474 / 7e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 475 / 3e-157 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 470 / 1e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 463 / 1e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 458 / 7e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 461 / 1e-153 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 457 / 4e-152 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039117 [exp] 496 / 3e-168 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 486 / 3e-164 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 471 / 4e-159 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 470 / 2e-155 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 465 / 3e-155 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 458 / 3e-153 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 458 / 2e-152 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 458 / 5e-150 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 452 / 2e-149 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051300 [exp] 988 / 0 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 502 / 2e-170 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G037600 [exp] 496 / 9e-169 AT3G46790 997 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 490 / 9e-167 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 486 / 1e-165 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 486 / 5e-164 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 486 / 2e-162 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 482 / 5e-162 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 491 / 2e-161 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 478 / 1e-160 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040504 pacid=23173861 polypeptide=Lus10040504 locus=Lus10040504.g ID=Lus10040504.BGIv1.0 annot-version=v1.0 ATGGCGGGAGCTTCATTCGGCAGCGCCGGATTCAATCGTTCACTACGCCGTCTCATCTCTCACCAATTCCCTCGTCAACTCACCATTGCCACCTCGGCTC CAATCTGGCCACATAGCTTAGCTTCACTATGCGCTCAGGGCAACCTCCGAGCGGCTTTGCTGGAAATGGCTATGCAGGGACCTATGATGAAGTTCGACGG GTACAATCTCTTGCTAAACGAGTGCGTCAAAACACGGGCGGTTAGGGAAGGCCAAAGGGTTCATTCCCACATGATCAAGACGTGTTACCTCCCGCCGCTG TACTTGAGGACCAGGCTGATTGTTCTGTACACGAAGTGCGATCGTCTGAGGGATGCCCGGCATGTGTTTGACGAAATGCCTGAGAGGAATGTCGTTCCTT GGACTGCCATGATTTCTGCTTACGCGCAGAGAGGGTTGGGGTCCGAAGCATTGAATTTCTTTTGCCGGATGTTGAGATCAGGTACGGAGCCAAACGAGTT CACTTTTGCATCAGTCCTTACCTCATGCACAGGCAGTTCAGGGTTCGATATAGGCATGCAGATACATTCGCTCATAATCAAGAGTAACTACGAAGCTCAC ATCTTTGTCGGAAGCTCACTTCTGGACATGTACGCCAAAGCTGGCAGACTCCACGAAGCTCGCAAAGTTTTTGAATGTTTACCGGAGAAGGATGTCGTTA CATGTACTGCAATGATTTCCGGCTACGCACAGCTAGGTCTGGACGAGGACGCATTGGACCTCTTTCGAAGATTGCAAAAGGAAGGAATGAACTCGAATTA CGTCACCTACGCGAGCGTATTAACTGCCTTATCTGGGCTGGCAGCTCTGGAGCTCGGTAAACAGGTGCACAACCATGTCCTTAGACGTGAACTCCCCTTC TACGTTGTTCTTCTGAACTCCATGATTGATATGTACTCGAAATGTGGAGACCTAGTTTACTCGAGACGGATCTTCGATAGCATGGTGGAGAGAACTGTCA TAACATGGAATGCAATGCTTGGAGGGTACAGTAAGCACGGGATGGGGAAAGAGACCGTGGAACTTTTCGAGCTCATGATGATGGAAAACAAAGTTAAACC CGACAGTGTGACTCTGCTGGCTGTGCTATCCGGCTGCAGCCATGGAGGGCTAGAAGATAAAGGATTGAAGATCTTCGACGAAATGTCGGATGGAAGCTAT GGAATCTACCCAGAGAGTGAGCATTACGGATGTGTAGTGGACTTACTCGGACGAACAGGCCGAGTAGAAGAGGCATTTCGGTTTATCGAGAAGATCCCTT CCGAACCAACACCTGCCATATGGGGATCGCTCCTGGGTGCCTGCAGGGTACACTCGAATTCAGACATTGGCAGTTTTGTGGGTCGCAAGCTTCTCGAAAT CGAGCCTGGAAATGCTGGGAACTACGTAATCCTTTCCAACTTATATGCCTCGTCCGGAAGATGGGAAGAAGTTAGGGAAGTGAGGAACCTGATGCTGGAG AAAGCAGTAACGAAGGAGCCCGGTAAGAGCTCGATCGAAGTGCAGCAGACCCTACATACTTTCTACGCAAGCGACCGATGCCATCCGAGGAAGGAAGAAG TTATGGACAAGGTGAAGGAGCTTTCCGTCAGGTTCAAGGAAGCAGGTTATGTTCCCGATTTGAGCTGCGTTCTCTACGATGTTGATGATGAACAGAAGGA GAAGATCCTTCTCGGCCACAGCGAGAAGCTGGCTCTGGCTTTCGGGTTGATAGCTAGCTCTCAAAAAGCTCCGATTCGGGTGATAAAGAATCTTAGGGTT TGTGTTGATTGCCACAGCTTTGCCAAGTTTGCTTCTAAGTTGTACGATAGGGAAGTTTCCTTGCGGGACAAGAATCGGTTCCATCGTATTGTTGGAGGGG TTTGCTCATGTGGAGACTATTGGTGA
AA sequence Show only first row Show all	>Lus10040504 pacid=23173861 polypeptide=Lus10040504 locus=Lus10040504.g ID=Lus10040504.BGIv1.0 annot-version=v1.0 MAGASFGSAGFNRSLRRLISHQFPRQLTIATSAPIWPHSLASLCAQGNLRAALLEMAMQGPMMKFDGYNLLLNECVKTRAVREGQRVHSHMIKTCYLPPL YLRTRLIVLYTKCDRLRDARHVFDEMPERNVVPWTAMISAYAQRGLGSEALNFFCRMLRSGTEPNEFTFASVLTSCTGSSGFDIGMQIHSLIIKSNYEAH IFVGSSLLDMYAKAGRLHEARKVFECLPEKDVVTCTAMISGYAQLGLDEDALDLFRRLQKEGMNSNYVTYASVLTALSGLAALELGKQVHNHVLRRELPF YVVLLNSMIDMYSKCGDLVYSRRIFDSMVERTVITWNAMLGGYSKHGMGKETVELFELMMMENKVKPDSVTLLAVLSGCSHGGLEDKGLKIFDEMSDGSY GIYPESEHYGCVVDLLGRTGRVEEAFRFIEKIPSEPTPAIWGSLLGACRVHSNSDIGSFVGRKLLEIEPGNAGNYVILSNLYASSGRWEEVREVRNLMLE KAVTKEPGKSSIEVQQTLHTFYASDRCHPRKEEVMDKVKELSVRFKEAGYVPDLSCVLYDVDDEQKEKILLGHSEKLALAFGLIASSQKAPIRVIKNLRV CVDCHSFAKFASKLYDREVSLRDKNRFHRIVGGVCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	0	1
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	1.4	0.8902
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	1.4	0.8917
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10040648 [exp]	2.4	0.8385
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	3.0	0.8639
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	4.5	0.8466
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	5.7	0.8321
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	6.2	0.8137
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	7.0	0.8364
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10027455 [exp]	8.4	0.8119
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	9.2	0.8463

Compare expression of checked genes

Lus10040504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.