Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54710 171 / 5e-47 ATCDT1B, CDT1B, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1) AT2G31270 164 / 4e-44 ATCDT1A, CDT1A, CDT1 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011306 [exp] 744 / 0 AT3G54710 110 / 2e-25 ARABIDOPSIS HOMOLOG OF YEAST CDT1 B, homolog of yeast CDT1 B homolog of yeast CDT1 B (.1) Lus10000708 [exp] 190 / 1e-51 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10024879 [exp] 155 / 2e-41 AT2G31270 292 / 7e-93 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222700 [exp] 223 / 1e-65 AT2G31270 357 / 3e-116 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Potri.002G040100 [exp] 209 / 1e-60 AT2G31270 339 / 1e-109 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1) Potri.004G067700 [exp] 76 / 2e-14 AT2G31270 115 / 8e-27 ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, homolog of yeast CDT1 A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF08839 [flax] [poplar] CDT1 DNA replication factor CDT1 like
Representative CDS sequence Show only first row Show all	>Lus10040505 pacid=23174062 polypeptide=Lus10040505 locus=Lus10040505.g ID=Lus10040505.BGIv1.0 annot-version=v1.0 ATGAGATTACAAAAAATCAACTACTTCATCTTTCTCCCCGCTCCCTGCCGCTATCTCTTCCTCTCTCCTCGCCGTCGCCGCTCAGACTCTAAATCCTCCG ACGATCAATCACCCACGCCTCCTTGCCGGGGCCAAATCTCAAGATATATGGACTCCCTCTCCGCTGCTCCACAGCCACTGCCGCCTGCAACTCCGAAATC TCATCCGCCGGAAGCCACATCTCCTCCGTCCATGGCTGCAGACAGCGAAAAATCCGATTCTTTCAAAGGATCGGATCAGATCTCGCAAGAGGATCTGCTC GAGACGTTCACAAGCTTAGTAACTGCGATCCGCCTGCTTCGCCTGAAGGGCTCCGCTTCCACTTTCGCCAACGTAGCCCCCAAGGTCGAGTCCCTGACCA AGAGGGAGTTCTCCCGTCGAAATCTGGCTCAGTTGAAGTTCATCTTCCCCGAGGCAATCGAGGTGACCGGACTGGATCATCTTCGTGTCGCTCTGAATGT CGATTCTGTTTCAAAATCTGAGGAGAAAGGCAGCAGCCCTTACATGGTGTTGAGAGAAGAGTTCAGTAATCGGCTGGCAGATTTCTGCAAACATCACCCT GAGGATGATGAAGTTCCTGAGGCAGCGCTACTCGAGCCGGTCCATCTCTCAAATCAAGATCATCGAGAGGTGGATTCATCGTTGGAAGATGATGCGCTGC TCGACAAATTGAAGCCTGTTGCAGCTTCTCACTTCGAGCCATGTTTCCACAGGGGATTATCCAGGAGGGTTATGAAAGTTGAATTCGATGACGATGATAA TTCAATACAGCCATGCCTCGATTCGGAATCAGGGTTCGAAGAAGCTGATTGTTCTTCAGTTTGTGTGCCTTTCTTGCCTGTAACTCCAGGCAAGGAAAAA GGAGGTGGCTTTGACCTGATCCAGGCTACTCCAGTGAAAAGAGTTGAGTGTGCAACTCCTTCTAAGCGTATAGTAGACGATTCTTTCTCAAAGGAGGACG AATGCCAGGCAACTCCAGCGAAAGGAGTCGATTTGTCAACTCCATCAAAGTCTATTTACACAGCAACACCCGCTTTATGTACACCAAAGGTGCGGAATCT GATGAGCCCTGACGATGAGGACAGTGATGCTGTAGAGTCGGCAAACAAGCTGAAAAGGAGGCACCATGTAAGGACCAGGTCACTGAAGTTCGATGCTCCG GTGAACGATGACGTGTCTAATGGCAAGAATGTTGACCTTCTTGTAACTTTGATCAAGGAGAATGAGAGAAAAGGGGAAGAACAGATGGCGATGGCAGCAA GCTTACCGAAGCTGTTCAATACGATCGATTCGATTTTCCGGTCAGGAAGATCAGTCATGACAAAGGATGAGGTCATTCACAAGATAATTGCAGCTCATTT AGAAGTCGTCAACAGAGGTGAGGTAGAAGAGCAGCTGAAGATGTTAGGAGAAGTAATCCCAGAATGGATCTCCGAAAGAACAGCCTTCAGTGGCGATTCG CTCTTCTGCATCAACAAGTTGACGAGCTCGGCAGCCATGAGAGCACGTCTCGAAGAAGCATTTCCAGTAAAAGAAGCTAGCTTGGGGCTGGGGATAGCTG TGTAG
AA sequence Show only first row Show all	>Lus10040505 pacid=23174062 polypeptide=Lus10040505 locus=Lus10040505.g ID=Lus10040505.BGIv1.0 annot-version=v1.0 MRLQKINYFIFLPAPCRYLFLSPRRRRSDSKSSDDQSPTPPCRGQISRYMDSLSAAPQPLPPATPKSHPPEATSPPSMAADSEKSDSFKGSDQISQEDLL ETFTSLVTAIRLLRLKGSASTFANVAPKVESLTKREFSRRNLAQLKFIFPEAIEVTGLDHLRVALNVDSVSKSEEKGSSPYMVLREEFSNRLADFCKHHP EDDEVPEAALLEPVHLSNQDHREVDSSLEDDALLDKLKPVAASHFEPCFHRGLSRRVMKVEFDDDDNSIQPCLDSESGFEEADCSSVCVPFLPVTPGKEK GGGFDLIQATPVKRVECATPSKRIVDDSFSKEDECQATPAKGVDLSTPSKSIYTATPALCTPKVRNLMSPDDEDSDAVESANKLKRRHHVRTRSLKFDAP VNDDVSNGKNVDLLVTLIKENERKGEEQMAMAASLPKLFNTIDSIFRSGRSVMTKDEVIHKIIAAHLEVVNRGEVEEQLKMLGEVIPEWISERTAFSGDS LFCINKLTSSAAMRARLEEAFPVKEASLGLGIAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10040505 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	1.4	0.8808
AT3G53320			unknown protein		Lus10026478 [exp]	3.2	0.8231
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	4.2	0.8531
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	4.6	0.8057
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	5.5	0.8293
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Lus10005181 [exp]	8.5	0.8007
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	12.0	0.8083
AT1G68185			Ubiquitin-like superfamily pro...		Lus10035259 [exp]	14.2	0.7417
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	20.0	0.7837
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10016423 [exp]	24.7	0.7864

Compare expression of checked genes

Lus10040505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.