Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57800 271 / 2e-88 bHLH bHLH060 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G42300 265 / 1e-86 bHLH bHLH048 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G26260 163 / 1e-46 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G23690 160 / 6e-46 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 156 / 2e-43 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G07340 156 / 2e-43 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 153 / 2e-43 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G10120 144 / 9e-40 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G18300 143 / 1e-39 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G48560 145 / 3e-39 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011307 [exp] 643 / 0 AT3G57800 291 / 3e-96 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10042349 [exp] 349 / 5e-119 AT3G57800 260 / 3e-83 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10013052 [exp] 156 / 4e-43 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 151 / 9e-43 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040448 [exp] 150 / 2e-42 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10023562 [exp] 149 / 4e-42 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10029110 [exp] 152 / 2e-41 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10026008 [exp] 146 / 3e-41 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002337 [exp] 147 / 2e-40 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G051100 [exp] 345 / 4e-118 AT3G57800 305 / 8e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G057200 [exp] 319 / 1e-107 AT3G57800 280 / 2e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G156000 [exp] 165 / 6e-47 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.010G136100 [exp] 163 / 2e-45 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G117300 [exp] 159 / 8e-45 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.005G121850 [exp] 152 / 2e-42 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.008G113200 [exp] 154 / 7e-42 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G248500 [exp] 151 / 4e-41 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 150 / 8e-41 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 147 / 2e-39 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040506 pacid=23174163 polypeptide=Lus10040506 locus=Lus10040506.g ID=Lus10040506.BGIv1.0 annot-version=v1.0 ATGGAGACGCTATCAGGAGCCGGAGCTAGATCCGGCCCGGCGGCGAACGAGACAGCTGCTCTGGACTTCGGAGATGACATACGGCACTTGATAATCTCTG CTCCGAACGAAACCGAGAGCTCGTTCACTGCTCTCCTCGAATTGCCGCCCAATCAGGCCATGAAACTGCTTCACGACCCGAGCCGACCCGGAGCCGAGCA GCAGTACCGAAGCCACCACACTAACCGTCAGCTGCCTCAGCAGTTTAACGCCGAGCTGCTTACGTTCCCGACCAATGCCGCGCTGATCGAGCGCGCCGCG AAGTTCTCCGTCTTCGCCGCCGAGGAGGATATGCGTAAAAGCACCACTGCCACAATTGACCCTTCCCCTAATGATGATGATGATTCCTGCTCGAATGTTC TCGGGAAGGCAGTCGTTGTCAAGAGCGAGCCTGCCGAGACCCGACTCAATTCGTCGCCGACGGTAGCGAAAAATGACGAGAATCGACGGCAGGGAGCTAA GAGGAAGGAGCAGGAGAGGAAGGTTAAAGCTTCCTCAAAGAAGAGCAAATGCAACACGAAGGAGGATTCCGGCGAGAAGCTACCTTACGTTCACGTTCGA GCTCGCCGTGGTCAAGCTACAGACAGCCACAGCTTAGCAGAGAGAGCAAGGAGAGAGAAGATCAACGCCAGGATGAAGTTCCTTCAAGAGCTGGTCCCTG GCTGCAGCAAGATTTCTGGTACTGCGCTGGTATTGGACGAAATCATCAACCATGTCCAGACCTTGCAACGGCAAGTTGAGGTCCTGTCGATGAAACTTGC AGCAGTTAACCCAAGAATCGATTTCAATCTGGACGCTATACTGGCTGCAGAAAGTGGATCTCTAACGGAAAGCAACTTCCCAGCTATCATGATGCCGATT CTGTGGCCTGCCGAAGTCCAAGGAAGTGAGAACATGCAACAGTATCATCAATGGACTTTCGACGCCACTCACCCTCAAGCTTGGGGAAGAGAAAACAGCC ACAACTTCGTCATGACTCCCGAAAACTCCCTATTGAGTTACGTCTCCTCAGCAAATTCAGATGGAAGTTAA
AA sequence Show only first row Show all	>Lus10040506 pacid=23174163 polypeptide=Lus10040506 locus=Lus10040506.g ID=Lus10040506.BGIv1.0 annot-version=v1.0 METLSGAGARSGPAANETAALDFGDDIRHLIISAPNETESSFTALLELPPNQAMKLLHDPSRPGAEQQYRSHHTNRQLPQQFNAELLTFPTNAALIERAA KFSVFAAEEDMRKSTTATIDPSPNDDDDSCSNVLGKAVVVKSEPAETRLNSSPTVAKNDENRRQGAKRKEQERKVKASSKKSKCNTKEDSGEKLPYVHVR ARRGQATDSHSLAERARREKINARMKFLQELVPGCSKISGTALVLDEIINHVQTLQRQVEVLSMKLAAVNPRIDFNLDAILAAESGSLTESNFPAIMMPI LWPAEVQGSENMQQYHQWTFDATHPQAWGRENSHNFVMTPENSLLSYVSSANSDGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10040506 [exp]	0	1
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10011307 [exp]	1.0	0.8893
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	3.9	0.8578
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	4.2	0.8852
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	6.3	0.8283
AT5G23280	TCP	TCP7	TCP family transcription facto...		Lus10010177 [exp]	8.8	0.8268
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	8.9	0.8388
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	9.3	0.8003
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10029536 [exp]	10.4	0.8319
					Lus10032664 [exp]	11.2	0.8420
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	14.3	0.8143

Compare expression of checked genes

Lus10040506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.