Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66600 202 / 3e-59 Protein of unknown function, DUF547 (.1.2.3.4) AT2G23700 203 / 9e-59 Protein of unknown function, DUF547 (.1) AT3G18900 182 / 5e-52 unknown protein AT1G43020 160 / 2e-44 Protein of unknown function, DUF547 (.1.2.3.4) AT1G21060 158 / 2e-43 Protein of unknown function, DUF547 (.1.2) AT5G47380 154 / 3e-41 Protein of unknown function, DUF547 (.1) AT1G76620 147 / 2e-39 Protein of unknown function, DUF547 (.1) AT3G13000 140 / 1e-36 Protein of unknown function, DUF547 (.1.2) AT1G16750 130 / 3e-33 Protein of unknown function, DUF547 (.1) AT2G39690 107 / 1e-25 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011308 [exp] 387 / 4e-134 AT2G23700 157 / 4e-43 Protein of unknown function, DUF547 (.1) Lus10016786 [exp] 224 / 1e-66 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 222 / 4e-66 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 155 / 4e-41 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10033328 [exp] 137 / 4e-35 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 134 / 2e-34 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 134 / 4e-34 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 126 / 2e-31 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 122 / 6e-30 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G111100 [exp] 243 / 2e-74 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 239 / 1e-72 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 220 / 1e-65 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G033100 [exp] 216 / 2e-64 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 167 / 3e-46 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.001G157200 [exp] 147 / 7e-39 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.006G216800 [exp] 137 / 1e-35 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G003900 [exp] 132 / 2e-33 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 110 / 5e-26 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.014G034800 [exp] 97 / 1e-21 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10040507 pacid=23174213 polypeptide=Lus10040507 locus=Lus10040507.g ID=Lus10040507.BGIv1.0 annot-version=v1.0 ATGAAGGGGCAGCATCCAATTCCACCTAATCCCAATACAAGAACAAGAAAGAGCTCATTAAAGCAAGAGAGGTGTACACACAACAAAACAGAGTCCCCTG CATCACCGGTAGATGGCGGGATGCAGATGGTGTCGAGAGACGAGGAGGATTCTCGTTCGTTTCGGCGGCAGAAGAAGTACAATGTGGTTGAGAGAGGCTA CTCATCACTGTCTCATCACTCTACAGCTACTTCTGCTGCTGCTGTCTCTAGAGCCATTGGTTCATGTCACTATTCACTTCCTTTGTCCATGCTAGAGGAT GGAACATTTGGTGGGATGGAGATGATGTTGATGAGTCCAAATTGGGTATCTGAAGAGATGGTGAAGTGCATATCCATCATATACATTGAACTTTCACAGC CAAGTTCTTCAAGGCTTGGTGGCTCATCATCATCATCTTCATCATGCCAATTGATGAGTGAAGTCAGATGGATGAACATGGATTCCTTGAAGCTACAAGA TGTTCACCACAAGATGCACCACTTCAGGTCGCTTATATCGAGGCTAGAATCAGTGGAACCCGGAGAGATGAAGCATGGAGAAAAGCTTGCATTTTGGATC AATGTGCACAATTCACTAGTGATGCATGCTTTCTTGGTGTATGGCATCCCAAGGAACCATGGTAGAAGGATGTCTTTAGCACTGAAGGCTTCATGTAACG TGGGTGGTCAAACGGTTAGTGTAGAGATGATCCAGAGTTCGATCCTCAAATGCCACTTGCCTCGCCCGCGACAGCAATGGCTAGGAGCTCTGTTTCATCC ATGGAGAAAGCAGAAGACCAACAACGCAGATTCGAGAAACCCCTACTCCATCGACACCCACGAACCTCGTCTCTACTTCGCGCTCTGCACAGGCAACCAT TCCGATCCCCCGCTACGGATATACGCTCCGGAAACGGTGTTCTCGGATCTCGAAGCAGCGAAGCAAGAGTACATCCAGGCATCACTGGTACCAAACAAGA ACAAAGGAAAGAAGCAGAGATCAACAAATGTACTAGTACTGTATCTTCCGAAGATCGTGGAGCTTTTCGCAAAGGACTCGAAGCTCGGTGACCAGTCTGC TCTAATGGAGACCGAAATACTCCACCATCTTGACGATCTTCTGCCTGTGAGATCGATGATCATTCGTTGGCTTCCTCATAGCGTTGAGTTTAGATATTTG ATTGCTAGGGATTTTCCATAA
AA sequence Show only first row Show all	>Lus10040507 pacid=23174213 polypeptide=Lus10040507 locus=Lus10040507.g ID=Lus10040507.BGIv1.0 annot-version=v1.0 MKGQHPIPPNPNTRTRKSSLKQERCTHNKTESPASPVDGGMQMVSRDEEDSRSFRRQKKYNVVERGYSSLSHHSTATSAAAVSRAIGSCHYSLPLSMLED GTFGGMEMMLMSPNWVSEEMVKCISIIYIELSQPSSSRLGGSSSSSSSCQLMSEVRWMNMDSLKLQDVHHKMHHFRSLISRLESVEPGEMKHGEKLAFWI NVHNSLVMHAFLVYGIPRNHGRRMSLALKASCNVGGQTVSVEMIQSSILKCHLPRPRQQWLGALFHPWRKQKTNNADSRNPYSIDTHEPRLYFALCTGNH SDPPLRIYAPETVFSDLEAAKQEYIQASLVPNKNKGKKQRSTNVLVLYLPKIVELFAKDSKLGDQSALMETEILHHLDDLLPVRSMIIRWLPHSVEFRYL IARDFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23700			Protein of unknown function, D...		Lus10040507 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Lus10014701 [exp]	1.4	0.9050
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10013694 [exp]	3.5	0.9016
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	4.9	0.8712
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	5.2	0.8714
AT2G23700			Protein of unknown function, D...		Lus10011308 [exp]	5.9	0.8432
AT5G50290			unknown protein		Lus10001236 [exp]	12.2	0.8596
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10000642 [exp]	13.6	0.8568
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	14.0	0.8192
AT5G58300			Leucine-rich repeat protein ki...		Lus10034257 [exp]	16.7	0.8363
					Lus10036680 [exp]	19.6	0.7424

Compare expression of checked genes

Lus10040507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.