Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34370 728 / 0 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT2G16090 726 / 0 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) AT3G27710 587 / 0 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT3G27720 436 / 4e-148 ATARI4, ARI4, ATARI14 ARABIDOPSIS ARIADNE 4, ARIADNE 4, IBR domain containing protein (.1) AT2G31510 212 / 3e-61 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT1G05890 211 / 6e-61 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31770 210 / 1e-60 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 201 / 1e-57 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT1G65430 195 / 7e-55 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT2G31780 186 / 1e-52 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011309 [exp] 1028 / 0 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10042348 [exp] 859 / 0 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026319 [exp] 816 / 0 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) Lus10026856 [exp] 203 / 1e-57 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10013371 [exp] 195 / 3e-55 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 192 / 8e-54 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10025566 [exp] 186 / 3e-51 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10020229 [exp] 177 / 6e-48 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10000908 [exp] 64 / 3e-10 AT1G32340 662 / 0.0 NDR1/HIN1-like 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124304 [exp] 776 / 0 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 776 / 0 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.017G032000 [exp] 217 / 5e-63 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.007G126900 [exp] 216 / 2e-62 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.008G077100 [exp] 204 / 3e-58 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.010G180600 [exp] 204 / 5e-58 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 192 / 1e-53 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 192 / 2e-53 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.003G187700 [exp] 60 / 2e-09 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 60 / 3e-09 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10040508 pacid=23173867 polypeptide=Lus10040508 locus=Lus10040508.g ID=Lus10040508.BGIv1.0 annot-version=v1.0 ATGGAGGATTATGGAGATAGCGACGACGAGTGCTACATGTCCGATGAGGATCCGGATGAGTCAGTGGAAGTGTATGAGAACGAAGATTCCGATGCTGTCG GTGTCGTCGGCAAGCTTTCCACGGCGACGGTGATCACAAGAAATTCTCTACTTGCTGCACAGACAGAGGACTTAAGGAGAGTGATGGAGCTGCTGTCTCT TAGAGAACAGCATGCGAGGACTCTGCTGATCCACTACCGTTGGGATGTCGACAAGATGTTTTCTGTGCTGGTAGAAAAGGGGAAAGCGTGCTTGTATATG GGAGCCGGTGTTATGGTGGATGACCATTCGGATTACAGCATCCGTCCATGTTCATCTTCTACTGTGACTTGTGAAATCTGTATGGAGGATGTGCCTGTTA ATATGTCAACAAGTATGGACTGTCGCCATTGCTTCTGTAACGATTGTTGGACCGAACATTTCATTGTAAAAATAAACGAAGGTCAGAGCAGGCGTATCAG TTGCATGGCGCACAAATGCAATGCTGTATGTGATGAAGCTGTTGTCAGAAATTTGGTTAAGGAAAGGCATCCTGACTTGGCAGAGAAATTCGAGCGTTTT CTTTTGGAGTCTTATATAGAGGATAATAAAACGGTGAAATGGTGCCCCAGCATTCCACATTGTGGGAATGCTATAAGAGTTGAGGGAGATGCCGTTTGCG AGGTGCAATGTTCCTGTGGAATGCAGTTTTGTTTCAATTGCTTATCAGAAGCACACTCGCCTTGTTCGTGCATGATGTGGAAACTTTGGACTAAGAAGTG CAGCGATGAATCAGAAAATGTTAATTGGATTACAGTTCATACTAAGCCTTGTCCAAAGTGTCAAAAACCAGTTGAGAAGAATGGTGGCTGCAACTTGGTG TACTGTGTCTGTAAACAAGCATTTTGCTGGCTGTGTGGTGGAGCTACTGGGACAGCCCATACATGGGATTCAATAGCTGGTCACAGTTGTGGTCGTTTTA AAGAGGATGCGGAGGCAAAGAAGGCACGGGCTAAAAGGGATCTCAATCGATATATGCACTATTACAACCGATACAAAGCTCATACAGACTCATTTAAGCT TGAAAATAAACTCGAGGAGACTATCAAAGGAAGGGTGTCAGTTAGCGAAGCTAAGGAGTGGGAATTATGGGATTTCAGCTGGGTAACCAGGAGTCTAAAC AAACTTTTCAGATCAAGACGGGTGCTATCTTATTCTTACGTTTTTGCATTTTACATGTTCGGATTAGAACTGTTTGAGGGCGAGATGACAGCGGAGGACA GAGGAATAAAACAGAATCTATTTGAAGATCAGCAACAACAACTTGAGGCAAATGTTGAGAGACTCTCCAAGTATCTGGAAGAGCGCTTTGATATGTACGA TGTTGATAAACTAATGGAGACAAGGATGCAGGTCATCAATCTAACTGTTCTAACAGATACGCTCTGCAAAAGCATGTATGAGTGCATTGAGAATTTTTTA TTGGGTTCATTGAGTTCTCTTCAACTTGCAATTCATGCTATAGCCCCTTACAATTCCAACGGCATTGAGAAGGCCTCGGAACTACCTACCGAACTATCAA TTGGTGAGACGATGAAACGGGAAAAGCCATCAGGTTCCGAGACCTCGAATGCGAAGGAATGCTCGTTGTGGAAGAGGGTGAGGAAGGAGGTCAGCGGATT CTTTGATCTGAATATGCCTGCAGAGGTCATAGACTAG
AA sequence Show only first row Show all	>Lus10040508 pacid=23173867 polypeptide=Lus10040508 locus=Lus10040508.g ID=Lus10040508.BGIv1.0 annot-version=v1.0 MEDYGDSDDECYMSDEDPDESVEVYENEDSDAVGVVGKLSTATVITRNSLLAAQTEDLRRVMELLSLREQHARTLLIHYRWDVDKMFSVLVEKGKACLYM GAGVMVDDHSDYSIRPCSSSTVTCEICMEDVPVNMSTSMDCRHCFCNDCWTEHFIVKINEGQSRRISCMAHKCNAVCDEAVVRNLVKERHPDLAEKFERF LLESYIEDNKTVKWCPSIPHCGNAIRVEGDAVCEVQCSCGMQFCFNCLSEAHSPCSCMMWKLWTKKCSDESENVNWITVHTKPCPKCQKPVEKNGGCNLV YCVCKQAFCWLCGGATGTAHTWDSIAGHSCGRFKEDAEAKKARAKRDLNRYMHYYNRYKAHTDSFKLENKLEETIKGRVSVSEAKEWELWDFSWVTRSLN KLFRSRRVLSYSYVFAFYMFGLELFEGEMTAEDRGIKQNLFEDQQQQLEANVERLSKYLEERFDMYDVDKLMETRMQVINLTVLTDTLCKSMYECIENFL LGSLSSLQLAIHAIAPYNSNGIEKASELPTELSIGETMKREKPSGSETSNAKECSLWKRVRKEVSGFFDLNMPAEVID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	0	1
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	1.4	0.8389
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10009631 [exp]	3.0	0.7952
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	4.2	0.7816
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	5.1	0.8112
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	5.7	0.7626
AT1G51340			MATE efflux family protein (.1...		Lus10027367 [exp]	6.7	0.7838
AT2G23770			protein kinase family protein ...		Lus10022488 [exp]	7.5	0.7751
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	8.0	0.7302
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	9.2	0.7624
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	10.6	0.7549

Compare expression of checked genes

Lus10040508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.