Plant FIBer expression Database

Lus10040509 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G34350 749 / 0 HDR, CLB6, ISPH CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011310
[exp]
944 / 0 AT4G34350 743 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Lus10026322
[exp]
840 / 0 AT4G34350 760 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Lus10042345
[exp]
785 / 0 AT4G34350 713 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Lus10009762
[exp]
156 / 2e-45 AT4G34350 124 / 6e-34 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T124604
[exp]
808 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Potri.009G111569
[exp]
808 / 0 AT4G34350 736 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
Potri.004G150400
[exp]
743 / 0 AT4G34350 682 / 0.0 CHLOROPLAST BIOGENESIS 6, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02401 LYTB LytB protein
Representative CDS sequence
>Lus10040509 pacid=23173922 polypeptide=Lus10040509 locus=Lus10040509.g ID=Lus10040509.BGIv1.0 annot-version=v1.0
ATGGCCGTCTCGTTCCAGTTCTCTACGCTCTCGCTCAAAGCTGAGAAGCTCGCATCGGAGACTCGAGGAGCTTTCGGAAGTCTCCGGAGGATTGGCAGGC
CTGCTTCCGTCCGGTGCTCCGGCGGCGGAGATGAATCGGCATCGTTGTCTGTGGAGTCGGAGTTTGATTCCAAGGTGTTTAGGCATAATTTGACCAGGAG
CAAGAACTACAATCGGAGAGGGTTTGGACATAAGGAGGAGACTCTCGAGCTCATGAACCAGGAGTATACCAGCAGTGACATTATAAAGACACTGAAGGAG
AATGGATACGAGTTTACGTGGGGGGATGTTACTGTTAAGCTTGCAGAAGCTTATGGATTTTGCTGGGGAGTTGAGCGAGCTGTTCAGATTGCCTATGAAG
CAAGGAAGCAGTTCCCGGATGAGAAGATTTGGCTGACCAATGAGATCATTCACAACCCAACTGTTAACAAGCGTTTGGAGGATATGCAAGTCGAAGAAAT
CCCAATCGAGGAAGGACAGAAACAGTTCGAAGTTGTGAACAATGGTGACGTGGTGATTCTGCCTGCTTTTGGGGCTGCAGTTGATGAGATGTTGACTCTG
AGCAACAAGAATGTGCAAATCGTCGATACTACTTGCCCTTGGGTGTCTAAGGTTTGGAACACTGTTGAGAAACACAAGAAGGGAGAGTATACTTCAATCA
TCCATGGAAAATATTCCCATGAGGAAACTGTAGCTACCGCATCTTTCGCTGGGAAGTATGTTATTGTGAAGAATATGGATGAGGCAATGTACGTCTGTGA
TTATATTCTCGGAGGGGAACTCAATGGATCTAGCTCAACCAAAGAGGAGTTCCTAGAGAAATTCAAGTTTGCAGTGTCTGAGGGATTCGATCCTGACAGA
GATCTTCTTAAAGTTGGCATTGCAAATCAAACTACAATGCTTAAAGGAGAAACTGAAGATATTGGAAAACTATGCGAGAGGACCATGATGCAGAAGTACG
GAGTTGAAAATGTCAACGATCACTTCATAAGCTTCAACACCATTTGTGATGCTACTCAGGAGAGACAAGACGCAATGTTCAAACTGGTGGAGGAAAAAGT
GGACCTTATCCTAGTAGTTGGTGGATGGAACTCGAGCAACACGTCTCATCTTCAGGAAATCGCTGAGCTCCGCGGGATTCCTTCATACTGGATCGATACT
GAACAGAGAATCGGCCCAGGCAACAAAATCGCCTACAAGCTAAACCATGGCGAGCTGGTTGAGAAAGAGAACTTTCTGCCAAAAGGACGAATCACCATCG
GTGTCACATCTGGTGCTTCCACTCCTGACAAGGTGGTGGAAGATGCACTTACAAGGGTTTTCAACATCAAGAAGGAAGAAGCCTTGCAGACGGTTTAG
AA sequence
>Lus10040509 pacid=23173922 polypeptide=Lus10040509 locus=Lus10040509.g ID=Lus10040509.BGIv1.0 annot-version=v1.0
MAVSFQFSTLSLKAEKLASETRGAFGSLRRIGRPASVRCSGGGDESASLSVESEFDSKVFRHNLTRSKNYNRRGFGHKEETLELMNQEYTSSDIIKTLKE
NGYEFTWGDVTVKLAEAYGFCWGVERAVQIAYEARKQFPDEKIWLTNEIIHNPTVNKRLEDMQVEEIPIEEGQKQFEVVNNGDVVILPAFGAAVDEMLTL
SNKNVQIVDTTCPWVSKVWNTVEKHKKGEYTSIIHGKYSHEETVATASFAGKYVIVKNMDEAMYVCDYILGGELNGSSSTKEEFLEKFKFAVSEGFDPDR
DLLKVGIANQTTMLKGETEDIGKLCERTMMQKYGVENVNDHFISFNTICDATQERQDAMFKLVEEKVDLILVVGGWNSSNTSHLQEIAELRGIPSYWIDT
EQRIGPGNKIAYKLNHGELVEKENFLPKGRITIGVTSGASTPDKVVEDALTRVFNIKKEEALQTV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G34350 HDR, CLB6, ISPH CHLOROPLAST BIOGENESIS 6, 4-hy... Lus10040509
[exp]
0 1
AT1G70520 ASG6, CRK2 ALTERED SEED GERMINATION 6, cy... Lus10030589
[exp]
1.7 0.9881
AT3G11920 glutaredoxin-related (.1) Lus10030563
[exp]
2.0 0.9878
AT2G26930 CMK, CMEK, ISPE... PIGMENT DEFECTIVE 277, 4-\(cyt... Lus10026783
[exp]
3.5 0.9801
AT1G60690 NAD(P)-linked oxidoreductase s... Lus10023701
[exp]
3.5 0.9861
AT4G14640 CAM8, AtCML8 calmodulin-like 8, calmodulin ... Lus10014708
[exp]
4.8 0.9758
AT5G45860 RCAR5, PYL11 regulatory components of ABA r... Lus10003187
[exp]
5.0 0.9850
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Lus10042118
[exp]
5.7 0.9828
AT1G11300 protein serine/threonine kinas... Lus10023391
[exp]
5.9 0.9831
AT1G63970 MECPS, ISPF 2C-METHYL-D-ERYTHRITOL 2,4-CYC... Lus10028759
[exp]
7.2 0.9851
AT5G59100 Subtilisin-like serine endopep... Lus10004686
[exp]
7.3 0.9827

Lus10040509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.