Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49380 528 / 0 cytochrome c biogenesis protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011311 [exp] 801 / 0 AT1G49380 746 / 0.0 cytochrome c biogenesis protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124704 [exp] 597 / 0 AT1G49380 776 / 0.0 cytochrome c biogenesis protein family (.1) Potri.009G111692 [exp] 597 / 0 AT1G49380 778 / 0.0 cytochrome c biogenesis protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05140 [flax] [poplar] ResB ResB-like family
Representative CDS sequence Show only first row Show all	>Lus10040510 pacid=23173865 polypeptide=Lus10040510 locus=Lus10040510.g ID=Lus10040510.BGIv1.0 annot-version=v1.0 ATGGAGTCTCAAGTAACCAACAGATCTCTATACCAATCCCACCTCCTCACCTCTACGTTCAAGTTCAAGCCTCAAGTCCACATCTCCCGCCGCAAAACCC TAACCTTGAGATGCAAGCTCAAATCCACCCCAGAAACGAAGCTGGAGAGCAGCAACAAAGCTTCGAAAAAGATCGAGCTATGGAACTCCTCTCCGCCGCC TCTTTCTTCGTCGGAGGATGACGCCGGCGGTAAGAAGAAGGAACCAAAGGGTGCGGCGTTGAAGTCGGCGAAGAAGCTGTCGAGGAAGGTTTTGAGTCTG CTTTCCAATTTGCCCTTAGCCATTGGGGAAATGTTCGTCATTGCTGGGCTTATGGCTGTTGGTACTGTAATCGATCAAGGCGAATCACCGGAACACTATT TCGAGCAGTTCCCGGAAGAGTCGCCATTATTCGGATTCTTCACATGGAGATGGGTACTTACACTTGGCCTTGATCACATGTTCTCGTCGCCAGTTTTCCT GGCGACATTGGCGCTGCTCGGAGCATCTCTAATGGCGTGCACATACACAACTCAGATCCCCCTCGTTAAGGTTGCAAGAAGGTGGAGCTTCTTGCAGTCA GCTGAGGCTGTTCGTAAGCAGGACTTCTCTGATACTTTGCCAAGGGCTTCAGTTCAGGATCTTGGTGTTATCCTCATGGGAGCTGGATATGAGGTGTTCT CAAAGGGACCATGTCTTTATGCATTCAAGGGCCTAGTTGGTAGGTTTACTCCCATTGGAGTACACTTAGCCATGATCCTGATCATGGTAGGTGCAACACT AAGCGCCACAGGAAGCTTCAGAGGATCGGTTATAGTCCCACAAGGGTTGAACTTTGTTGTGGGAGATGTGTTGGGACCAAGTGGCTTCCTTTCCTTCCCT ACTGAAGCCTTCAGCACTGAGGTCCACGTCAACAAGTTCTCCATGGACTACTACGAAACCGGAGAGGTTTCACAGTTTCGTACAGACCTCTCGTTGTACG ATCTCAACGGGAAGGAAGTAATGAGGAAGACGATCAGCGTGAACGATCCCTTACGATCTATGCTTGCTCGTGACTTGCAGTCGATCGTGCTGTACGATCA GGAAGGGAAGTTCGTTGGGGTTCGGAGACCGAACTCGAATCTTCCGATTGAGGTAGATGGTGTGAAGATTGTGATTGAAGATGCAATTGGAAGTAGTGGT CTTGAGCTCAAGACTGATCCTGGAGTTCCAGTTGTATATGCCGGGTTTGGTGCCTTGATGCTTACGACATGCGTAAGCATCTTATCTCATTCACAGATAT GGGCTTTACAAGATGGGACATCAGTGGTGATTGGAGGGAAGAGCAACCGGGCAAAGGGCGAGTTTGAAGAGCAGGTAAACCGATTCCTAGATCAAGTACC TGAGCTGGTCGAATCGCCATCCAATCAGCAAGCAAACAGGACCAGTGGCTAG
AA sequence Show only first row Show all	>Lus10040510 pacid=23173865 polypeptide=Lus10040510 locus=Lus10040510.g ID=Lus10040510.BGIv1.0 annot-version=v1.0 MESQVTNRSLYQSHLLTSTFKFKPQVHISRRKTLTLRCKLKSTPETKLESSNKASKKIELWNSSPPPLSSSEDDAGGKKKEPKGAALKSAKKLSRKVLSL LSNLPLAIGEMFVIAGLMAVGTVIDQGESPEHYFEQFPEESPLFGFFTWRWVLTLGLDHMFSSPVFLATLALLGASLMACTYTTQIPLVKVARRWSFLQS AEAVRKQDFSDTLPRASVQDLGVILMGAGYEVFSKGPCLYAFKGLVGRFTPIGVHLAMILIMVGATLSATGSFRGSVIVPQGLNFVVGDVLGPSGFLSFP TEAFSTEVHVNKFSMDYYETGEVSQFRTDLSLYDLNGKEVMRKTISVNDPLRSMLARDLQSIVLYDQEGKFVGVRRPNSNLPIEVDGVKIVIEDAIGSSG LELKTDPGVPVVYAGFGALMLTTCVSILSHSQIWALQDGTSVVIGGKSNRAKGEFEEQVNRFLDQVPELVESPSNQQANRTSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49380			cytochrome c biogenesis protei...		Lus10040510 [exp]	0	1
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	1.7	0.9415
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10013856 [exp]	2.8	0.9194
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	2.8	0.9386
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	5.2	0.9088
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027577 [exp]	5.5	0.9078
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	5.9	0.9163
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	6.0	0.9061
AT2G30170			Protein phosphatase 2C family ...		Lus10010968 [exp]	6.2	0.8979
AT2G23390			unknown protein		Lus10038137 [exp]	6.6	0.9072
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042469 [exp]	7.3	0.9006

Compare expression of checked genes

Lus10040510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.