Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51100 166 / 4e-51 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011316 [exp] 361 / 2e-127 AT1G51100 208 / 1e-67 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132900 [exp] 177 / 2e-55 AT1G51100 196 / 1e-63 unknown protein Potri.001G417350 [exp] 59 / 2e-11 AT1G51100 114 / 1e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040511 pacid=23174136 polypeptide=Lus10040511 locus=Lus10040511.g ID=Lus10040511.BGIv1.0 annot-version=v1.0 ATGGCTACCACTCATTTCCCTTCCCTCTCAATCCCCCAATCCCAAAATTTCCACACCACCCCAATCCCATTTCTAACATCCCGGCGGACCTTAATATCAA TCAGACGATCAATCACAAACTGCAGCAGCACCACCAACAATGGCGGCGTTCCCTTCCCAGAATCGCAAAACCAGAGCTCAATCGACAACAACAACAAATC GCCACTTCCCTTCGCCGAACCACCTCAGCAAGACCAAGAACAACAACCGCTCCCATTCTCCACCACGCTAAACAACACAAACTTCCCGATCGAGAAGCGG CGGAAATCCGAAATCCTCCGCGAGAAGAAGAAGAGCCAGAGGGAGCTGCTGAAACCGGACTCCCCGCCGCCGAACTACGAGATCGGGTGGAAGAGGACGA AGAATCTGGAGGCGATCAAAGCAGCCGTGGAGAAGCCGGTGGGGTACACGATAATGGATTTCATGGAGAAGCTGGAGATCCTGATTGCGTTGAGGCAGTT CGGGTCGACGGAGCTGCTGGCGAAAGTCGGGGAGATCGTGGCGGAGAGGGTTCGGGAGGAGGCCGAGCTGCTGAAGGAAGAAGGGAAAGTTGAGGAGAGG ATGGTAACGGAGCTTTTTAGGGTTTTGAGGTTGATGGAGATGGACCTGGCTATGGTTAAAGGTGCGGTGAAGGAGGAGACATTGGAGGAGAGGCTTGACC AGGCTAAGGCTAGGTGTAGACAGGCTATTCTTGTTGCTGCTTCGTTTTGA
AA sequence Show only first row Show all	>Lus10040511 pacid=23174136 polypeptide=Lus10040511 locus=Lus10040511.g ID=Lus10040511.BGIv1.0 annot-version=v1.0 MATTHFPSLSIPQSQNFHTTPIPFLTSRRTLISIRRSITNCSSTTNNGGVPFPESQNQSSIDNNNKSPLPFAEPPQQDQEQQPLPFSTTLNNTNFPIEKR RKSEILREKKKSQRELLKPDSPPPNYEIGWKRTKNLEAIKAAVEKPVGYTIMDFMEKLEILIALRQFGSTELLAKVGEIVAERVREEAELLKEEGKVEER MVTELFRVLRLMEMDLAMVKGAVKEETLEERLDQAKARCRQAILVAASF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51100			unknown protein		Lus10040511 [exp]	0	1
AT1G51100			unknown protein		Lus10011316 [exp]	2.0	0.9523
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10039912 [exp]	2.6	0.9532
AT4G00030			Plastid-lipid associated prote...		Lus10020912 [exp]	4.5	0.9314
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	6.0	0.9415
AT1G73885			unknown protein		Lus10034345 [exp]	6.5	0.9518
AT1G74070			Cyclophilin-like peptidyl-prol...		Lus10008990 [exp]	6.5	0.9354
AT3G09050			unknown protein		Lus10035515 [exp]	8.0	0.9351
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10018521 [exp]	12.0	0.9406
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Lus10039739 [exp]	12.5	0.9397
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	12.7	0.9317

Compare expression of checked genes

Lus10040511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.