Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57610 804 / 0 ADSS, ATPURA adenylosuccinate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011317 [exp] 984 / 0 AT3G57610 806 / 0.0 adenylosuccinate synthase (.1) Lus10042358 [exp] 880 / 0 AT3G57610 818 / 0.0 adenylosuccinate synthase (.1) Lus10026310 [exp] 876 / 0 AT3G57610 812 / 0.0 adenylosuccinate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087900 [exp] 796 / 0 AT3G57610 806 / 0.0 adenylosuccinate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00709 [flax] [poplar] Adenylsucc_synt Adenylosuccinate synthetase
Representative CDS sequence Show only first row Show all	>Lus10040512 pacid=23174108 polypeptide=Lus10040512 locus=Lus10040512.g ID=Lus10040512.BGIv1.0 annot-version=v1.0 ATGGATGTCTCATGTTCCTTTGCTCTCGACTTCACTCCCCTCGCTACTCCTCACTCTAGGAAATCCGTCCTCCGTCTCCCTATCTCCTCCGCCGGTCCTC GCCGCAACGCCGTCGTCTGCTCCTCCGTCAAGTCTTCTCCTGCTCTCACTGTCGTTTCTGGGGACAGCGAGAGTCGAATCGGATCTTTGAGTCAGGTCTC CGGAGTGCTCGGGTGCCAGTGGGGAGATGAAGGTAAAGGCAAGCTCGTCGATATCTTAGCTCAGCATTTCGACGTCGTAGCTCGCTGCCAGGGAGGAGCT AATGCAGGCCACACAATCTACAATTCAGAAGGGAAGAAATTCGCCCTGCACTTGGTTCCTTCAGGAATCCTCAACGAGGATACACTCTGTGTGATAGGGA ACGGAGTGGTTGTTCATCTCCCGGGTCTGTTCAAGGAAATTGACGGCTTGGAATCGAATGGGGTCTCTTGCAAGGGCAGAATACTCGTGTCTGATCGTGC TCACTTGTTGTTCGATTTCCATCAAGAAGTTGACGGCTTGAGAGAAGCCGAACTTGCCAAGTCCTTCATTGGGACGACAAAGAGAGGGATCGGACCTTGC TATTCGAGCAAAGTGATTCGCAATGGGATCAGAGTAGGTGACCTCAGGCACATGGACACCTTCCCACAAAAGCTTGATCTTTTGCTGGCAGATGCTGCTT CGAGGTTCCAAGGTTTTAGCTACGGCCCCGAAATGCTCAGGGAAGAAGTCGAGAGGTTCAAGAGGTTCGCCGAGAGGTTGGAGCCTTACATTGCTGATAC CGTGTTTGTGATGAACGAGTTCATTACTCAGAAGAAGAAGGTTCTGGTCGAAGGTGGTCAGGCCACTATGCTCGATATCGATTTCGGAACTTACCCTTTC GTGACATCGTCTAGCCCCTCGGCTGGTGGAATCTGCACTGGTCTCGGTATTGCTCCACGGGCTCTCGGTGATCTTATCGGGGTGGTGAAAGCTTACACTA CTAGGGTTGGTTCTGGTCCTTTCCCGACCGAAATCTTGGGTCAAGGAGGCGATCTCCTCAGGTTTGCTGGCCAAGAATTCGGAACAACAACTGGTCGCCC TCGTCGTTGTGGTTGGCTCGATATCGTGGCCCTGAAGTATTGCTGTCAGATCAATGGCTTCTCATCGTTGAATCTAACCAAACTGGACGTTCTGTCCGAT CTTCCTGAAATCCAACTGGGAGTTGCTTACAAGCTAGCCGATGGTACCCCGATCAAGTCATTTCCAGCCGATCTTCGCTTGCTCGAACAGATCAAGGTCG AGTATGAAGTTATGCCGGGGTGGAAGACTGACATATCCTCTGCTAAGAGCTACTCAGACCTTCCAAAGGCTGCACAGAGATACGTTGAGAGGATCGAGGA GCTCGTTGGCGTACCGATTCATTACATCGGCAATGGCCCGGGACGATCCGCTCTCATCTTCAAATAA
AA sequence Show only first row Show all	>Lus10040512 pacid=23174108 polypeptide=Lus10040512 locus=Lus10040512.g ID=Lus10040512.BGIv1.0 annot-version=v1.0 MDVSCSFALDFTPLATPHSRKSVLRLPISSAGPRRNAVVCSSVKSSPALTVVSGDSESRIGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDVVARCQGGA NAGHTIYNSEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLREAELAKSFIGTTKRGIGPC YSSKVIRNGIRVGDLRHMDTFPQKLDLLLADAASRFQGFSYGPEMLREEVERFKRFAERLEPYIADTVFVMNEFITQKKKVLVEGGQATMLDIDFGTYPF VTSSSPSAGGICTGLGIAPRALGDLIGVVKAYTTRVGSGPFPTEILGQGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKYCCQINGFSSLNLTKLDVLSD LPEIQLGVAYKLADGTPIKSFPADLRLLEQIKVEYEVMPGWKTDISSAKSYSDLPKAAQRYVERIEELVGVPIHYIGNGPGRSALIFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	0	1
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	1.4	0.9158
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	1.7	0.9135
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020917 [exp]	6.2	0.8780
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	7.7	0.9143
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	9.2	0.9086
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10014049 [exp]	9.9	0.9015
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	12.6	0.8963
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	13.2	0.9069
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	13.9	0.9113
AT5G55610			unknown protein		Lus10004412 [exp]	16.4	0.9055

Compare expression of checked genes

Lus10040512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.