Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26360 983 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 251 / 3e-75 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G20050 186 / 2e-51 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT5G20890 177 / 3e-48 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 177 / 7e-48 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 148 / 6e-38 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 134 / 6e-33 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 127 / 7e-31 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 127 / 1e-30 TCP-1/cpn60 chaperonin family protein (.1) AT4G33240 96 / 5e-20 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021150 [exp] 1054 / 0 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10017853 [exp] 1050 / 0 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 1023 / 0 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10006457 [exp] 253 / 3e-76 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 253 / 4e-76 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10008406 [exp] 249 / 2e-74 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 246 / 2e-73 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10026773 [exp] 218 / 2e-63 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006240 [exp] 181 / 2e-50 AT1G24510 816 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G138200 [exp] 981 / 0 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 981 / 0 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 974 / 0 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 262 / 3e-79 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.010G051700 [exp] 254 / 1e-76 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 247 / 1e-73 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 246 / 2e-73 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 219 / 1e-63 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 176 / 1e-47 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 175 / 1e-47 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10040514 pacid=23157935 polypeptide=Lus10040514 locus=Lus10040514.g ID=Lus10040514.BGIv1.0 annot-version=v1.0 ATGCACGCTCCAGTTCTTGTTCTCAAGGACTCCTTGAAGCGCGAGTCTGGACAGAAGGTTCACCATGCCAATATCCAGGCCTCAAAGGCTGTAGCTGATA TTATCCGCACAACCTTGGGTCCTAGATCTATGTTGAAGATGCTCCTTGATGCTTCTGGAGGGATTGTTGTCACCAATGATGGAAATGCAATTTTGCGCGA GTTAGATCTTGCTCATCCAGCAGCAAAGTATGCAGTGATTCAAGTTCGTAATGGGTCCTGCATGGATTTTCCTTTTAACATTTTCCCTAGACAAGTGTTA GCTTGCTTTGCTAACCATTGTCCTGATCTACTATATCCACAGTCTATGATTGAGTTGAGTCGCACACAAGATGAAGAAGTGGGAGATGGAACAACATCGG TTATAGTCCTTGCTGGGGAGATGCTCCATGTTGCCGAAGCCTTCATTGAAAAAAATTATCATCCTACAGTCATATGTCGAGCATACAACAAAGCTCTGGA GGATGCTATTGCTGTTCTTGATAAAATTGCTATGACTATTGACGTGAATGATCGTAAGTTGCTTAGGTTTGATTTATATACTAGGCTGCATTACAGAATT TTCCAGAAGCATACTTCTTTAGCTAGTCTGCAGCAAGTGCTGCTTGTTGCGCAGATGGAAGTGGTGGTAACTAATTGGCTTTCATTCGGATTACGTGACA CATGGGAACTTTTGACAGGTGGAACTATGTCAAGCCTGGTAAAGAGTTGCATTGGCACAAAGTTCACTAGTCAGTTTGGAGACTTGGTTGCTGATCTTGC AATTAATGCTACCAAAACTGTCGGTGTCGACCTTGGTCAAGGTTTGCGTGAAGTTGATATCAAGAAGTATATTAAGGTTGAAAAAGTTCCTGGTGGCCAA CTAGAGGATTCCAAAGTTCTTAAAGGTGTTATGTTTAACAAGGATGTGGTGGCTCCTGGAAAAATGAAAAGAAAGATTGTTAATCCACGCATCGTTCTCC TTGATTGTCCACTTGAATACAAAAAAGGTGAGAATCAAACAAATGCCGAGCTGGTGAAAGAAGAAGACTGGGAACTTCTGCTGAAAATGGAAGAGGAATA CATTGAGAATATCTGTGTGCAGATTCTTAACTTCAAACCGGATTTGGTGATCACTGAAAAGGGTCTTAGCGATTTGGCATGCCACTATTTTAGCAAGGCT GGCGTTAGTGCCATCAGAAGGCTAAGGAAGACAGACAATAACCGAATTGCGAAAGCATGTGGTGCTGTTATTGTGAATAGACCCGATGAGTTGCAAGAGT CTGATGTTGGTACTGCAGCTGGACTATTTGAGGTTAAGAAAATTGGTGACGAGTTCTTCTCCTTCATTGTTGACTGCAAAGATCCAAAGGCGTGTACTGT TCTCTTGAGGGGTGCCAGCAAGGATCTCCTGAATGAGGTGGAAAGAAACTTGCAGGATGCCATGGGTGTGGCCAGAAACATACTTAAAAACCCAAAACTT GTTCCTGGTGGTGGTGCTACTGAGTTAACTGTATCTGCTACGCTAAAGCAGAAGAGTTCTTCTGTAGAAGGCATCGAAAAGTGGCCTTATGAAGCAGCAG CTATAGCTTTTGAGGCAATTCCGCGAACTTTGGCCCAAAACTGTGGTGTGAATGTGATCCGTACAATGACTGCACTGCAAGGGAAACATGCTAATGGTGA AAATGCATGGACTGGCATAGACGGGAACACCGGTGAAATTACTGACATGAAAGAGAGAAAGATATGGGATGCTTACAACGTGAAGGCACAAACTTTCAAG ACAGCAATAGAAGCAGCTTGCATGCTATTGAGGATTGATGACATTGTCAGCGGAATCAAGAAGAAACAAGCCCCTGGAGCAGGTCCTTCCAAGCCACAGA TCGAGACCGAGGGTGATGCTGATGGTGAACAGATTCTGCCCGACTAA
AA sequence Show only first row Show all	>Lus10040514 pacid=23157935 polypeptide=Lus10040514 locus=Lus10040514.g ID=Lus10040514.BGIv1.0 annot-version=v1.0 MHAPVLVLKDSLKRESGQKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDLAHPAAKYAVIQVRNGSCMDFPFNIFPRQVL ACFANHCPDLLYPQSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIEKNYHPTVICRAYNKALEDAIAVLDKIAMTIDVNDRKLLRFDLYTRLHYRI FQKHTSLASLQQVLLVAQMEVVVTNWLSFGLRDTWELLTGGTMSSLVKSCIGTKFTSQFGDLVADLAINATKTVGVDLGQGLREVDIKKYIKVEKVPGGQ LEDSKVLKGVMFNKDVVAPGKMKRKIVNPRIVLLDCPLEYKKGENQTNAELVKEEDWELLLKMEEEYIENICVQILNFKPDLVITEKGLSDLACHYFSKA GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTAAGLFEVKKIGDEFFSFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMGVARNILKNPKL VPGGGATELTVSATLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWTGIDGNTGEITDMKERKIWDAYNVKAQTFK TAIEAACMLLRIDDIVSGIKKKQAPGAGPSKPQIETEGDADGEQILPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10040514 [exp]	0	1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	2.0	0.9534
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	6.0	0.9412
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10023381 [exp]	7.5	0.9184
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10032439 [exp]	8.1	0.9336
AT3G12870			unknown protein		Lus10031776 [exp]	8.1	0.9352
AT4G28510		ATPHB1	prohibitin 1 (.1)		Lus10019161 [exp]	10.0	0.8863
AT1G05440			C-8 sterol isomerases (.1)		Lus10041200 [exp]	10.4	0.9261
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	11.4	0.9313
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	12.8	0.9345
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	14.3	0.9332

Compare expression of checked genes

Lus10040514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.