Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08050 102 / 2e-27 Protein of unknown function (DUF1118) (.1) AT1G74730 49 / 5e-07 Protein of unknown function (DUF1118) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021151 [exp] 117 / 1e-32 AT5G08050 143 / 1e-43 Protein of unknown function (DUF1118) (.1) Lus10042179 [exp] 52 / 3e-08 AT1G74730 199 / 3e-65 Protein of unknown function (DUF1118) (.1) Lus10004269 [exp] 52 / 3e-08 AT1G74730 199 / 3e-65 Protein of unknown function (DUF1118) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058600 [exp] 115 / 3e-32 AT5G08050 119 / 2e-34 Protein of unknown function (DUF1118) (.1) Potri.015G065100 [exp] 61 / 3e-11 AT1G74730 142 / 7e-43 Protein of unknown function (DUF1118) (.1) Potri.012G070600 [exp] 50 / 2e-07 AT1G74730 132 / 5e-39 Protein of unknown function (DUF1118) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06549 [flax] [poplar] DUF1118 Protein of unknown function (DUF1118)
Representative CDS sequence Show only first row Show all	>Lus10040515 pacid=23157829 polypeptide=Lus10040515 locus=Lus10040515.g ID=Lus10040515.BGIv1.0 annot-version=v1.0 ATGCCACGTGGAGCACCAAAAGGCCATTGTGATTGGGGTGGCTGTTCATCTCTCCGTCACACATTCCTATCATTCATATTAGCCAAATCACAAGCAGCAG ACGAAGCAGCACAATCACAGAAGAAGAACAAGGAGATGATGATGCTGATGACAACAATTGGCTGTGGACGTAGCATCACCGGAAAATCTCCCTTCCACTT CAAGCCAATGGCAGCTGCTCAGAAGTCGTCACCATTGCCTCCACCTTCCAAAACTGTCAGCACAAAGAAGGGTACGACGTCGTCTCAGGTGAAGCTCCTG ACAAGGGTGGAGCAACTGAAGCTACTTACCAAAGCTGAAAAGGCAGGCTTGCTCTCTGCGGCAGAGAAATTTGGTCTCTCATTGTCTTCGATTGAGAAAC TGGGTCTTCTCTCCAAAGCCGAGGAACTTGGGGTTCTCTCTGCTGCTACTGACCCTGCAACTCCAGCTACTCTCTTCACTATCAGCTTGGGATTGCTCCT ACTGGGTCCTTCTTGTGTTTTGTTAGTCCCTGAGGATTACCCTTGGGAGGTTGTTCTTCAGACCCTTGTGGTCTTGGTCTCTGTTCTTGGTGGCTCTGCT GCTTTTGCGGCTTCCAGTTTTGTTTCCAACCTGCAGAAGTAA
AA sequence Show only first row Show all	>Lus10040515 pacid=23157829 polypeptide=Lus10040515 locus=Lus10040515.g ID=Lus10040515.BGIv1.0 annot-version=v1.0 MPRGAPKGHCDWGGCSSLRHTFLSFILAKSQAADEAAQSQKKNKEMMMLMTTIGCGRSITGKSPFHFKPMAAAQKSSPLPPPSKTVSTKKGTTSSQVKLL TRVEQLKLLTKAEKAGLLSAAEKFGLSLSSIEKLGLLSKAEELGVLSAATDPATPATLFTISLGLLLLGPSCVLLVPEDYPWEVVLQTLVVLVSVLGGSA AFAASSFVSNLQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	0	1
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10024330 [exp]	1.0	0.9455
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	2.8	0.9253
AT2G28605			Photosystem II reaction center...		Lus10029532 [exp]	3.3	0.9043
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	6.2	0.8970
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	7.5	0.9167
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10006037 [exp]	7.7	0.8955
					Lus10030090 [exp]	10.1	0.9221
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10038638 [exp]	10.6	0.9078
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	12.0	0.9134
AT1G50450			Saccharopine dehydrogenase (....		Lus10014913 [exp]	13.0	0.8875

Compare expression of checked genes

Lus10040515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.