Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08030 562 / 0 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) AT1G74210 535 / 0 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G55480 80 / 7e-16 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT5G58170 78 / 3e-15 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 76 / 2e-14 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT4G26690 75 / 3e-14 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT3G20520 73 / 1e-13 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT1G66970 72 / 2e-13 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 66 / 3e-11 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021152 [exp] 653 / 0 AT5G08030 503 / 1e-179 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) Lus10032576 [exp] 89 / 6e-19 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019605 [exp] 87 / 4e-18 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 78 / 3e-15 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10019606 [exp] 77 / 6e-15 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10031604 [exp] 76 / 1e-14 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 70 / 1e-12 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10040036 [exp] 64 / 1e-10 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10016584 [exp] 64 / 2e-10 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058400 [exp] 581 / 0 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) Potri.006G187600 [exp] 87 / 5e-18 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.018G110600 [exp] 86 / 9e-18 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.001G360800 [exp] 83 / 7e-17 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360700 [exp] 81 / 4e-16 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10040516 pacid=23157756 polypeptide=Lus10040516 locus=Lus10040516.g ID=Lus10040516.BGIv1.0 annot-version=v1.0 ATGGGTTCAAGATGCTTTGCTCCCATCATATTGTTTCTGTCGGTGGTGGTGGCTGTAAGTGGTGGAAGGCCTCTGTATCCTCTACCAAGTAAACTAGCTC AAGGTGCCAAACAGCCTCTACAGGCGTCTCGTCCTTACAACATTGCACACAGAGGATCCAATGGAGAACTTCCTGAAGAAACTGGACCTTCCTACATGAG AGCCATTGAAGAGGGAGCAGATTTCATAGAAACTGATATCCTATCCACTAAAGATGGTGTTCTGGTATGCCTTCATGATGTTACACTTGATAATACTACT GACGTTATGGAGCACAAGGAGTTTGCTGATAGGAAACGGACCTATGAAGTTCAAGGGGAGAATATGACTGGCTTTTTCATTGTTGATTTTACTCTTAAAG AATTGAAGACATTGCGGACTAAGCAGAGATTAGACTTCAGAGATCAACAATACAACGGTGGGGATGCTTTATTCATGAATTCATTAGCTACTGTAGCATG GAAATATCCTATCATTACCTTTGATGAATACATCTCTATTGCACTTGATGCACCAAGAGTAGTGGGAATATATCCAGAGATGAAGAACCCAGTGTTCATC AATGAGCATGTGAAATGGTCCGGTGGTCGTCGATACGAAGATGTTTTCATGGAGACTGTTAAGAAGTATGGCTACAAAGGTTCATACCTTTCAAAAGATT GGATGAAACAGCCAGTGTTTATCCAGTCTTTCGCCCCAACTTCGCTTCTCTACGTGTCAAACTTGACCGACATCCCATTGGTCTTCCTCATTGACGACGT TACAGTTTTAACCGAGGACACCAAACAGACGTACTCAGAAATAACTTCTGATGCATACCTGGATTACATTAAGAATTACGTGGTGGGCATTGGACCTTGG AAGGATACAGTAGTGCCAGTAGTGAATAACCATACGCAAGCACCGACGGATCTTGTTGCAAGAGCTCACGCCCGTGACCTGCAGGTGCATCCGTACACAT ACCGTAACGAGAACAAGTACTTGCACTTCGACTTCAATCAAGACCCGTACCAGGAATACGAATACTGGATCAACAAAATAGGAGTTGATGGACTGTTCAC AGATTTCACTGGCAGCCTTCACAGGTATCAGGAAGCCACGTCACCTATTTCCAAAGATGATCACAAGGCATCATCGGTGCTGCACAAAATAGCATCGCTG GTCTCTTCTTACAGAAATGGATGA
AA sequence Show only first row Show all	>Lus10040516 pacid=23157756 polypeptide=Lus10040516 locus=Lus10040516.g ID=Lus10040516.BGIv1.0 annot-version=v1.0 MGSRCFAPIILFLSVVVAVSGGRPLYPLPSKLAQGAKQPLQASRPYNIAHRGSNGELPEETGPSYMRAIEEGADFIETDILSTKDGVLVCLHDVTLDNTT DVMEHKEFADRKRTYEVQGENMTGFFIVDFTLKELKTLRTKQRLDFRDQQYNGGDALFMNSLATVAWKYPIITFDEYISIALDAPRVVGIYPEMKNPVFI NEHVKWSGGRRYEDVFMETVKKYGYKGSYLSKDWMKQPVFIQSFAPTSLLYVSNLTDIPLVFLIDDVTVLTEDTKQTYSEITSDAYLDYIKNYVVGIGPW KDTVVPVVNNHTQAPTDLVARAHARDLQVHPYTYRNENKYLHFDFNQDPYQEYEYWINKIGVDGLFTDFTGSLHRYQEATSPISKDDHKASSVLHKIASL VSSYRNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	0	1
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	1.0	0.8611
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	1.4	0.8533
					Lus10022348 [exp]	2.4	0.8434
AT1G61065			Protein of unknown function (D...		Lus10018474 [exp]	3.9	0.8439
AT5G41590			Protein of unknown function (D...		Lus10028756 [exp]	4.0	0.8143
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	5.7	0.8485
AT2G14910			unknown protein		Lus10013888 [exp]	6.9	0.8214
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	9.9	0.8309
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	10.0	0.8075
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	11.2	0.8188

Compare expression of checked genes

Lus10040516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.