Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08020 885 / 0 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 858 / 0 ATRPA70D Replication factor-A protein 1-related (.1) AT2G06510 311 / 2e-97 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT5G45400 303 / 3e-92 ATRPA70C Replication factor-A protein 1-related (.1) AT4G19130 292 / 1e-88 Replication factor-A protein 1-related (.1) AT1G52950 80 / 2e-15 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021153 [exp] 1245 / 0 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 1016 / 0 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003268 [exp] 360 / 5e-119 AT5G08020 282 / 2e-89 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10023805 [exp] 283 / 2e-84 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 282 / 2e-84 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10033436 [exp] 197 / 1e-55 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10034737 [exp] 191 / 4e-53 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033435 [exp] 164 / 7e-46 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10033272 [exp] 127 / 2e-30 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057300 [exp] 993 / 0 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.003G102700 [exp] 304 / 9e-93 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.018G065300 [exp] 298 / 3e-92 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.019G061550 [exp] 64 / 2e-10 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.003G004401 [exp] 53 / 2e-07 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G165480 [exp] 51 / 1e-06 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04057 [flax] [poplar] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10040517 pacid=23157896 polypeptide=Lus10040517 locus=Lus10040517.g ID=Lus10040517.BGIv1.0 annot-version=v1.0 ATGTCGAAATCAGTCACCCCGGATGCCATCTCCACCCTGCTCTCCATCCCTAAGCCAGATTCCCCGTCTGATCTCCCAGAGATTGTTGTTCAGGTCACCA ACCTCCAGCCTAAAGGCAAAGCTTATGGCCTTGACGTCAACGATGGTAAGATGAAGCTGAAATCGCTGTTCAATTCGCGGATGTCTCCTGACATAACCTC CGGGAAAGTTCAGAATCTGGGTCTTATTCGGATTCTAGATTACACCATCAACGAGATTCCGAACAAGTCTGAGAAATATATGATCATTACCAGCTGTGAG GTGGTATCTCCTGCACTTGACGCCGAGATCAGTAATGGATCTCAAGATGGGGGGATTTTTAAGAAGCCAAAGCTAGGAAATGAATTGAAAAGTGAAGCAA CGGGGACTGGGATTGTTTTGAAGCCGAAGCATGAAACTGTCACCAAGTCAGCCGCTCAAATAGTCAATGAACAGAGGACAAATATGGCTCCTAGTGCTCG TATGGCGATGACGAGGAGGGTTCACCCTCTTGTCTCTCTGAACCCTTACCAAGGGAATTGGACCATCAAGGTCAGGGTTACAGGCAAAGGGAACATGCGC ACCTATAAGAACATGAGGGGTGAAGGATGTGTTTTCAATGTTGAGTTAACCGATGAAGATGGTACTCAAATACAAGCAACAATGTTCAATGAAGCTGCAA AGAAGTTCTTTGAGAGGTTCCAGTTGGGGAAGGTTTATTACATATCAAAGGGATCTCTTAGAGTTGCTAACAAGCAGTACAAAACTGTTGAGAATGATTA TGAGATGACTTTGAATGACAACTCTGAAGTTGAAGAGGTTGCTAATGAATCAACTATGATCCCTGCAACCAAGTTTAACTTTGTTCCCATTGATCATTTG GGCCCCTACGTCAATTCCAAAGACCTCGTTGATGTCATTGGAGTTGTACAAAGTGTGTCTCCTACCTTGAGTATTAGGAGGAAAAGTGATAATGAGCAAA TCCCAAAGCGTGACGTTACCATTGCAGATGAGAGTGAGAAGACTGTTGTTGTTTCTTTGTGGAATGAGCTTGCTACTGGACCTGGGCAAGAGCTGTTGGA CATTGCTGATCAATCACCTGTTGTTGCTATCAAAGCTCTTAGAGTTGGAGACTTTCAAGGTGTATCTTTGTCCACGGTAGGGAAAAGCATTTTGCAGATC AACCCCGACACCCCAGAGTCAAAGAAATTAAGATCATGGTATGATTCTAATGGCAAAGACAGTTCTATGGCCCCTATTGGTTCTGGAATGAGCCCTTCAA TGAAGAATGGAGGAAGGTCCATGTACGATGACCGAGTGCCACTGTCTCATATAATAAATGACCAATCCTTGGGTGATGGGAAGCCTGCATTCTTCACCAT TAGAGGGTACGTAAGCTTTATCAAGCCTGATCAGACTATGTGGTACCGGGCTTGCAAGACTTGCAACAAGAAAGTGACTGATGGGATGAGTGGTGGATAC TGGTGTGAAGGATGCCAGAAGAATGAATCTGAGTGTAGCTTAAGGTACATATTAGCACTGAAAGTGACAGATGCAAGTGGTGAAGGATGGGTTTCTGCAT TCAATGACGAAGCAGAGAAGATTTTAGGCTCCTCTGCTGATGAGCTTGACCAATTGAGATCACAGGATGATGGGAGTTCCTACCAATCAAAGCTGAAAGC AGCCACATGGAATCCACATTTGTTCAGGGTTAGTGTTACTCAAAATGAGTACAACCATGAGAAGAGGCAGAGGATCACAGTAAAAGCAGCGAGCTCAGTT GATTTTGCTGCTGAATCCAAGTTTTTGCTACAAGAGATTTCAAAGATGAGAGGGTCACAGTAG
AA sequence Show only first row Show all	>Lus10040517 pacid=23157896 polypeptide=Lus10040517 locus=Lus10040517.g ID=Lus10040517.BGIv1.0 annot-version=v1.0 MSKSVTPDAISTLLSIPKPDSPSDLPEIVVQVTNLQPKGKAYGLDVNDGKMKLKSLFNSRMSPDITSGKVQNLGLIRILDYTINEIPNKSEKYMIITSCE VVSPALDAEISNGSQDGGIFKKPKLGNELKSEATGTGIVLKPKHETVTKSAAQIVNEQRTNMAPSARMAMTRRVHPLVSLNPYQGNWTIKVRVTGKGNMR TYKNMRGEGCVFNVELTDEDGTQIQATMFNEAAKKFFERFQLGKVYYISKGSLRVANKQYKTVENDYEMTLNDNSEVEEVANESTMIPATKFNFVPIDHL GPYVNSKDLVDVIGVVQSVSPTLSIRRKSDNEQIPKRDVTIADESEKTVVVSLWNELATGPGQELLDIADQSPVVAIKALRVGDFQGVSLSTVGKSILQI NPDTPESKKLRSWYDSNGKDSSMAPIGSGMSPSMKNGGRSMYDDRVPLSHIINDQSLGDGKPAFFTIRGYVSFIKPDQTMWYRACKTCNKKVTDGMSGGY WCEGCQKNESECSLRYILALKVTDASGEGWVSAFNDEAEKILGSSADELDQLRSQDDGSSYQSKLKAATWNPHLFRVSVTQNEYNHEKRQRITVKAASSV DFAAESKFLLQEISKMRGSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	0	1
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	1.0	0.9903
AT3G20490			unknown protein		Lus10019628 [exp]	1.7	0.9766
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	2.0	0.9820
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	2.0	0.9746
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10022775 [exp]	2.6	0.9677
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	4.5	0.9735
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	6.5	0.9706
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	6.7	0.9660
AT5G42330			unknown protein		Lus10030749 [exp]	6.9	0.9600
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	7.1	0.9649

Compare expression of checked genes

Lus10040517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.