Plant FIBer expression Database

Lus10040518 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021153
[exp]
261 / 3e-81 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G061700
[exp]
73 / 5e-15 AT1G74220 91 / 1e-20 unknown protein
Potri.015G057200
[exp]
59 / 5e-10 AT1G74220 77 / 9e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10040518 pacid=23157827 polypeptide=Lus10040518 locus=Lus10040518.g ID=Lus10040518.BGIv1.0 annot-version=v1.0
ATGGGGAACATGAGCTTCACCAAGGACCAGGCCTTCTTGTTGGAGAAATCAGGGGAGCTGGGCTACGATCCGAATTTTCCCATGGGGTTGGGCCCAATGG
CGACCCCGATGCGGGAAGACCGCCCGCCCAAAAGTAATGCTAGCAGCCCAAGTCCGAAGCCTTCCGAGATGACGTCGCCTCAAGATCAGTCCAAGTCAAG
TGGGTCGGGTTTGGGTGAATCCAAAGCTGTCGAAACGATGCGAGAGGTTATAAAGGAAAACGATAAAAATGGTGATGGTGCGAATCAAAATCAAAATCAT
AATCATTATGATACGGGTGCAGGAGGCGGTCTAAGGTCTCACCCGACCCAAGTTACTAAGGACCCGTCTTTTGAATCAGCCAGTCTTCGCCGGAGTTCAA
CCGCTAGTGGAGCTAGTGTCAAATCCTTCGCATTCCCTATATTGACAGGGGACAAACAACATCGATCAACACAATCACAATCACAGCCGCCGACTCCTCT
GCCAGCACAACAAGAGGGGGCGAGGTCGAGATCAGATCGGGACAACGACAATAATCAGTCGTCGCAGCCAGCAACGCCGAAATCAACGGAGAATAAAGGG
AATACTAATCAAAATGGTACGGCCGGCAATCAGGATAGTAAATGGTTTGCTTGCTTTCCTTGTTGCTCTTCACGAGCTTCTTGA
AA sequence
>Lus10040518 pacid=23157827 polypeptide=Lus10040518 locus=Lus10040518.g ID=Lus10040518.BGIv1.0 annot-version=v1.0
MGNMSFTKDQAFLLEKSGELGYDPNFPMGLGPMATPMREDRPPKSNASSPSPKPSEMTSPQDQSKSSGSGLGESKAVETMREVIKENDKNGDGANQNQNH
NHYDTGAGGGLRSHPTQVTKDPSFESASLRRSSTASGASVKSFAFPILTGDKQHRSTQSQSQPPTPLPAQQEGARSRSDRDNDNNQSSQPATPKSTENKG
NTNQNGTAGNQDSKWFACFPCCSSRAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G74220 unknown protein Lus10040518
[exp]
0 1
AT1G50380 Prolyl oligopeptidase family p... Lus10032964
[exp]
1.4 0.9940
AT2G39510 nodulin MtN21 /EamA-like trans... Lus10040310
[exp]
2.8 0.9870
AT2G04160 AIR3 AUXIN-INDUCED IN ROOT CULTURES... Lus10039087
[exp]
2.8 0.9891
AT2G46200 unknown protein Lus10021211
[exp]
4.0 0.9521
AT4G32110 Beta-1,3-N-Acetylglucosaminylt... Lus10042384
[exp]
4.5 0.9858
AT3G19550 unknown protein Lus10013901
[exp]
4.6 0.9887
Lus10012079
[exp]
6.0 0.9855
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Lus10023446
[exp]
6.5 0.9816
AT2G33530 SCPL46 serine carboxypeptidase-like 4... Lus10040324
[exp]
7.3 0.9471
AT3G19550 unknown protein Lus10002114
[exp]
7.5 0.9752

Lus10040518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.