Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61040 266 / 2e-80 unknown protein AT5G08010 195 / 2e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021155 [exp] 1074 / 0 AT5G61040 287 / 1e-88 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057600 [exp] 401 / 3e-131 AT5G61040 309 / 2e-96 unknown protein Potri.008G096100 [exp] 123 / 1e-29 AT5G61040 106 / 2e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040520 pacid=23157881 polypeptide=Lus10040520 locus=Lus10040520.g ID=Lus10040520.BGIv1.0 annot-version=v1.0 ATGGATATTTGGGCTTTTGGAGCAGCGGCAGCAGCTGCTGCTGGATGCATAGCCAATCAGTGGAAACCCAATTCCAAGCCTGGCTCAGATTTCTCTACTG AGGTCTCAAGCTGTGAGAAATCTGAAATCCCGAGTTGTTGCATAAGTAGGTTACTTTGCAGAAACAAGTTACCGAAAGATTCTGGTGCTGGTAAAAGTGC AGGCTTGGATGACAGATCAGATGCCTATTCAGGTGCAGCTTCTGCTAGTGGTTATGTCGAAAATCAGGATCAGAATGCACCTCTAGCTGGAGCAAGTGAC TCGACTACTGACATGATTAATTATACTACGAAGCATTGTAGTGGGGGAATGGACTTTTATAATGATGCTAGGGGTAATATAAGCTCTGTGAGAAGAACAT ATCCTCGTACTCATCTTATCAGACCTATAAGTTCTCTTGAAAGTTGTCTCATTGCTCAGTTATGGAATGAGCATACTGAAATGGAAGAGTATGTGTTCCG TGCCCTTCCTTCACCATCAACAGCTATGAGACCGTTGATCGTAACCAACGGTAGTCAAGTAATTAGTAGGTCCAGCCTCGATTATGCAAGTGGTGTGAAC AAGGATGAAACTGTTTATGGTGTCCCTCCATTGCCTAAATTTGGGTGTTCAAACCCTGCAAAGGAGGGGAAGTCTCAGAGACGGAAGGAGTACCGTCAAA AGCTAACCAGGTTGGATAAAAAGTCAAGCAGCAACAGTCATCCACAGCAAGGGTCAACTGACGAGAAAGTTTTATTCTTTCTTGGGATTTCTCTTGGTGT GATGTCTTCGCTTGTTGCAAACAAAATAGACGTTGACAAACTAAAGGAGTCGTTAAAGCAGACAAAGAATTTGGTTCAAGATTTGCAAGATGAACTCGAG ATGAAGGAGGCATTAACAGTGAAAGAGCTAGCCAATGAGAAGTATGAATCTCCGGTTACTACAAATGATAATTCCTCTGACAGGTTTGCTTCAAATTCAC TTTTCCCTACTGAAGATGCACACAAGTCAATTGAAAATGAGAGCCAAGAATCGAACATCGAGAAGGCAAAGGTTCCAGAATACATTGGCAATATTGAAGC GGAGCTTGAAGCTGAACTTGAGAGGTTGGGGCTCAACGTTAGTGCATCAAGTCTAGAGAGGAGACTGTCCGATCTCATCGAACTTGATCCGGACTTTGTA GCAGATTTTGCTCAAGGTGAATTGAAAGTCGACAGGGTCAGGGAAGGTGGTTCACTTTCTGGCCCGGACCGAGATGCAAGTGGCACCTCAACAGCCCATT CAGGAAACACTGCAGTCTCAGCCAGAGAGTTATGCGTGCGTCTGCATGAAGTTATTCAGTCCAGGCTAGAGGCTCGCATCAGAGAGCTCGAAAAAGCCCT AGAAAGCAGCCAGAGAAAGGTGCTACTTATGGAGTCGGGAGGTAGTGTTGTTCAGAGACTTTCAAGCAGGGAGCTAAGATACTCGCCTGGGGAACAAAGT CCCGTTTGCCAAGGTGACTTCAGTTCTGTAGCTCAGCCTGTAGTTATGAACCTTTCAGGGGAAGCTCTAGATGCTTACAATGAGGCATATGAAGAGCTGA GCAAGACGAATGAGTCGGGGGAGGATTATTCTCCAATAGCATTCTATGAGCAGAATGTGCCGGGTCGAGATGGTTACAAACAGCATAAAGAGGAGTCGAG AACAGAAGCACGCTTGACTAGCGAATTGATTGATTCAGAGAGATTTCAAGAACTGCAGTACAGTGACGTAGGAAGTGAAGACGACAGTGACTCGAATGAG GAGATGGAAGAATTGATAAAGCAAATACTTGAGAGGACAAAGAAAGGCTCTCCCGCTGTGATAAACGCACAAAGGATGCTGTGTTCAGGCGATGACTGA
AA sequence Show only first row Show all	>Lus10040520 pacid=23157881 polypeptide=Lus10040520 locus=Lus10040520.g ID=Lus10040520.BGIv1.0 annot-version=v1.0 MDIWAFGAAAAAAAGCIANQWKPNSKPGSDFSTEVSSCEKSEIPSCCISRLLCRNKLPKDSGAGKSAGLDDRSDAYSGAASASGYVENQDQNAPLAGASD STTDMINYTTKHCSGGMDFYNDARGNISSVRRTYPRTHLIRPISSLESCLIAQLWNEHTEMEEYVFRALPSPSTAMRPLIVTNGSQVISRSSLDYASGVN KDETVYGVPPLPKFGCSNPAKEGKSQRRKEYRQKLTRLDKKSSSNSHPQQGSTDEKVLFFLGISLGVMSSLVANKIDVDKLKESLKQTKNLVQDLQDELE MKEALTVKELANEKYESPVTTNDNSSDRFASNSLFPTEDAHKSIENESQESNIEKAKVPEYIGNIEAELEAELERLGLNVSASSLERRLSDLIELDPDFV ADFAQGELKVDRVREGGSLSGPDRDASGTSTAHSGNTAVSARELCVRLHEVIQSRLEARIRELEKALESSQRKVLLMESGGSVVQRLSSRELRYSPGEQS PVCQGDFSSVAQPVVMNLSGEALDAYNEAYEELSKTNESGEDYSPIAFYEQNVPGRDGYKQHKEESRTEARLTSELIDSERFQELQYSDVGSEDDSDSNE EMEELIKQILERTKKGSPAVINAQRMLCSGDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08010			unknown protein		Lus10040520 [exp]	0	1
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	1.0	0.9067
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	1.7	0.9012
AT5G46560			unknown protein		Lus10011046 [exp]	2.0	0.8943
AT5G07670			RNI-like superfamily protein (...		Lus10027217 [exp]	2.2	0.8915
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	3.5	0.9033
AT1G55170			unknown protein		Lus10034321 [exp]	3.5	0.8617
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	5.2	0.8762
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10002745 [exp]	5.7	0.8374
AT5G61450			P-loop containing nucleoside t...		Lus10031163 [exp]	6.5	0.8574
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	6.7	0.8567

Compare expression of checked genes

Lus10040520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.