Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18640 410 / 3e-145 PSP 3-phosphoserine phosphatase (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021156 [exp] 565 / 0 AT1G18640 399 / 7e-141 3-phosphoserine phosphatase (.2) Lus10034686 [exp] 479 / 8e-172 AT1G18640 407 / 2e-143 3-phosphoserine phosphatase (.2) Lus10017851 [exp] 478 / 3e-171 AT1G18640 405 / 7e-143 3-phosphoserine phosphatase (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066200 [exp] 477 / 8e-172 AT1G18640 417 / 3e-148 3-phosphoserine phosphatase (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10040521 pacid=23157646 polypeptide=Lus10040521 locus=Lus10040521.g ID=Lus10040521.BGIv1.0 annot-version=v1.0 ATGCAAGGCTTGGTGCAGCTACGTACCATTACTCCAGTTTATCCTTCGAATAGGCAGCGTAATTCTTCTTCCGTTCCTGCCATTTTCCTGCAGTTGCGGA AGAAGGTAATACAAAGATGTGACATGACCAAGAAACAGCATCGGTCATTCTATCAGGTTGCTGCTGCAGTTGAACCAATAACGACCTCACTGGGCCAGTT TGATAACACAATGCCATCTAAAGAAGTGCTTCACCTTTGGAGAAGTGCTGACGCGGTGTGCTTTGATGTCGATAGCACTGTGTGCCTTGATGAAGGCATT GATGAACTTGCAGACTTCTGTGGAGCTGGCGAGGCTGTCGCAGAATGGACAGCAAGGGCAATGGGAGGCTCTGTTCCTTTTGAAGAGGCATTGGCTGCTA GATTATCGCTATTCAAACCTTCTATAGCCAAACTCCAAGAATTTTTGGAGAAGAGGCCTCCCAAGATTTCTCCTGGCATAGATGAGTTAGTGAAGAAGCT CAAGGCCAAGAACACCAATGTCTACCTGATATCTGGTGGCTTTCGGCAAATGATAAATCCTGTTGCCTCAGTCCTTGGGATTCCAGTTGAAAACATATTT GCCAACAACCTTCTATTTGGGAGTTCAGGGGAGTTTGTAGGTTTTGACTCAAATGAGCCTACTTCGAGGAGTGGAGGGAAAGCAACAGCTGTGCAGCAAA TAAGAAAGGCTCGTGGGTACAAAGCGATGGTAATGATTGGGGATGGCGCAACTGATCTCGAGGCTCGAAAACCAGGTGGCGCGGACTTGTTCATATGCTA TGCTGGGGTGCAGCTCCGAGAGGCAGTTGCTGCAAAAGCAGATTGGCTGGTTTTGAATTTCGCAGACCTTATAAATTCTATGGAATAG
AA sequence Show only first row Show all	>Lus10040521 pacid=23157646 polypeptide=Lus10040521 locus=Lus10040521.g ID=Lus10040521.BGIv1.0 annot-version=v1.0 MQGLVQLRTITPVYPSNRQRNSSSVPAIFLQLRKKVIQRCDMTKKQHRSFYQVAAAVEPITTSLGQFDNTMPSKEVLHLWRSADAVCFDVDSTVCLDEGI DELADFCGAGEAVAEWTARAMGGSVPFEEALAARLSLFKPSIAKLQEFLEKRPPKISPGIDELVKKLKAKNTNVYLISGGFRQMINPVASVLGIPVENIF ANNLLFGSSGEFVGFDSNEPTSRSGGKATAVQQIRKARGYKAMVMIGDGATDLEARKPGGADLFICYAGVQLREAVAAKADWLVLNFADLINSME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10040521 [exp]	0	1
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10037189 [exp]	5.4	0.9555
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10043060 [exp]	12.1	0.9259
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10036738 [exp]	13.8	0.9245
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10022453 [exp]	14.3	0.9264
AT1G62790			Bifunctional inhibitor/lipid-t...		Lus10024591 [exp]	15.4	0.8817
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	16.5	0.9351
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	16.7	0.9258
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	19.2	0.9278
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10000788 [exp]	19.4	0.9342
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10024859 [exp]	20.1	0.9216

Compare expression of checked genes

Lus10040521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.