Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27210 298 / 3e-101 Protein of unknown function, transmembrane-40 (.1) AT3G05010 289 / 1e-97 Protein of unknown function, transmembrane-40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033835 [exp] 271 / 4e-90 AT3G05010 420 / 4e-149 Protein of unknown function, transmembrane-40 (.1) Lus10018985 [exp] 270 / 1e-89 AT3G05010 417 / 9e-148 Protein of unknown function, transmembrane-40 (.1) Lus10018984 [exp] 115 / 3e-31 AT5G27210 206 / 9e-67 Protein of unknown function, transmembrane-40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G044700 [exp] 275 / 8e-92 AT3G05010 431 / 2e-153 Protein of unknown function, transmembrane-40 (.1) Potri.013G031200 [exp] 273 / 4e-91 AT3G05010 431 / 1e-153 Protein of unknown function, transmembrane-40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10160 [flax] [poplar] Tmemb_40 Predicted membrane protein
Representative CDS sequence Show only first row Show all	>Lus10040523 pacid=23157662 polypeptide=Lus10040523 locus=Lus10040523.g ID=Lus10040523.BGIv1.0 annot-version=v1.0 ATGAGTATTTACTCTATAACCAATGCATCTTCCCCCTCTTCTTCCTCCCCTCCTCCTGGCGATCCATCCGGAGTCGATGTCGAACGTGACAGCTGCCACG GCATCTGGTACGCCGCCCTGCTGGTTGTGCCGGCGGCGCTGTTCGTGGTCTACTTGGGGATGAACGCGGCCAAGAACGTGAAGAAGCTCTGGCGCGGAGG TTCCTACGTCATGATTTCATATTACGCCCTTCTCTGGCTCGCCACCTCTCTCAATCTCGCTTGGTGCTGCCTTCAGGGTTGGAAATGCTCTCCTCAAAAG GAGATTGCTTGGAATTTTCTGTCGCTGCTAACAGCGTCTTCAATATCATGCTTGGAGATTAGTGTGATTGCTTTCTTGCTTCAGGATAATTATGCTACTG GAATGGAAACTTTAGGACGAACTTTTCTCGTGTCAGGGATTATTGTTGCTGTCGATCTGTTATTCAAGGCCATTTACGTTTTTGGTTTCCGGGTACCACT TTTCGTTGAGGGCCTTGAGAGTGCTGAAAGAATGAAGTGGGGATTATGGATCATCCATCAGGTGTTGATAACCGGAGCGTATGGATTCGTACTATTTGTT CATTTCTCCGGAGGCAAGGATAAATTACCTCCCAGGCCAGCATTCTACAACTACATCAGCTTGATGTTTTCCATAAATGCCATGGGATTATTTGCTTGCG TGGTTGCTGCTGTCGGGGTTGGCTTCGGCATTTGGTTGTACTACTTCATGGTTCTGTGCTACCATTCCCTCTACCTTCCTTTCGTATACACAACGTTTCT AGCCGATTTTTTCCAGGAAGAAGATTTTCTACTTGACAATGCATATTACTCAGAGATGAAAGATGCAGGGTTCTTTGATGCAGAATGGGAATAA
AA sequence Show only first row Show all	>Lus10040523 pacid=23157662 polypeptide=Lus10040523 locus=Lus10040523.g ID=Lus10040523.BGIv1.0 annot-version=v1.0 MSIYSITNASSPSSSSPPPGDPSGVDVERDSCHGIWYAALLVVPAALFVVYLGMNAAKNVKKLWRGGSYVMISYYALLWLATSLNLAWCCLQGWKCSPQK EIAWNFLSLLTASSISCLEISVIAFLLQDNYATGMETLGRTFLVSGIIVAVDLLFKAIYVFGFRVPLFVEGLESAERMKWGLWIIHQVLITGAYGFVLFV HFSGGKDKLPPRPAFYNYISLMFSINAMGLFACVVAAVGVGFGIWLYYFMVLCYHSLYLPFVYTTFLADFFQEEDFLLDNAYYSEMKDAGFFDAEWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05010			Protein of unknown function, t...		Lus10040523 [exp]	0	1
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	6.2	0.7205
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10012963 [exp]	9.6	0.6834
AT5G43400			Uncharacterised conserved prot...		Lus10041147 [exp]	13.6	0.6642
AT1G13900			Purple acid phosphatases super...		Lus10037091 [exp]	14.3	0.6918
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	15.4	0.6941
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10029165 [exp]	24.3	0.6730
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	24.7	0.6605
AT3G62370			heme binding (.1)		Lus10023692 [exp]	24.9	0.6393
AT2G19130			S-locus lectin protein kinase ...		Lus10024348 [exp]	26.4	0.6663
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10002359 [exp]	28.2	0.6560

Compare expression of checked genes

Lus10040523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.