Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 361 / 2e-123 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45550 242 / 4e-77 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33730 229 / 2e-73 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT2G45560 231 / 7e-73 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 230 / 3e-72 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 229 / 6e-72 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 224 / 7e-70 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT1G33720 221 / 5e-69 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G40890 219 / 3e-68 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT5G44620 207 / 2e-63 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021158 [exp] 504 / 1e-179 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 377 / 1e-129 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008918 [exp] 222 / 3e-69 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 221 / 6e-69 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 221 / 6e-69 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 221 / 9e-69 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10017742 [exp] 220 / 4e-68 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008938 [exp] 219 / 5e-68 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028857 [exp] 218 / 8e-68 AT2G45550 459 / 2e-158 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073300 [exp] 391 / 4e-135 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.009G069100 [exp] 299 / 4e-99 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G274600 [exp] 283 / 1e-92 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 226 / 5e-71 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 227 / 9e-71 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 225 / 2e-70 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 225 / 2e-70 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 223 / 9e-70 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G141400 [exp] 222 / 4e-69 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G031100 [exp] 220 / 2e-68 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10040525 pacid=23157929 polypeptide=Lus10040525 locus=Lus10040525.g ID=Lus10040525.BGIv1.0 annot-version=v1.0 ATGAAGAAGCTCCACCTCAGATTCGACTCGTTCTTGAGCCAATTACTTCAGGAACACGGGAAGACAGCTCACGATGTTTCTGGAGGACATGTGGATTTCT TGAGTACGTTGATTGCATTGAGGCTTGAAGACGGCCTTGACGGTGAGGGAGAGAAGCTCACGGATAATGAAATTAAAGCTTTGCTTCTGAACATGTTCAC GGCGGGAACCGACACGTCATCAAGCACGGTGGAGTGGGCTATAGCAGAGCTAATCCGGAACCCTAAAATAATGGGTCAACTCCAAAACGAGCTGGACACC GTCGTGGGCCGAGACCGGCTAGTAACGGAGCTGGACCTGCCCAAGTTTCCTTACCTCCAGGCCGCCATCAAGGAAACGTTTCGTCTCCATCCATCGACTC CTCTATCTCTCCCGAGGATAGCGGCCCAAAGCTGTCAAATCAACGGCCACCACATCCCCAAAGGTACCACCCTCCTTGTCAACGTTTGGGCCATAGCACG GGACCCAGACGTCTGGACCCACCCGTTGAGGTTCGACCCAGGGAGGTGCTTGCCCGGTGTGGACATTAAAGGGAGCGATTTCGAGCTCATCCCTTTCGGG GCGGGGCAGAGGATATGCGCGGGTTTGAGCTTGGGGCTCCGGATGGTTCGACTGATGACTGCTACCTTGGCTCACGCTTTCGATTGGGAGCTGGTTAGGG GATTGAAGCCGGGGAATTTGAACATGGATGAGGCTTACCGGCTGACTCTCCAGCGAGCTGAGCCACCGAATCTGAAGCTGAAGCCTCGTTTGTCGGTGCA GGTTTACGGAGGTTGA
AA sequence Show only first row Show all	>Lus10040525 pacid=23157929 polypeptide=Lus10040525 locus=Lus10040525.g ID=Lus10040525.BGIv1.0 annot-version=v1.0 MKKLHLRFDSFLSQLLQEHGKTAHDVSGGHVDFLSTLIALRLEDGLDGEGEKLTDNEIKALLLNMFTAGTDTSSSTVEWAIAELIRNPKIMGQLQNELDT VVGRDRLVTELDLPKFPYLQAAIKETFRLHPSTPLSLPRIAAQSCQINGHHIPKGTTLLVNVWAIARDPDVWTHPLRFDPGRCLPGVDIKGSDFELIPFG AGQRICAGLSLGLRMVRLMTATLAHAFDWELVRGLKPGNLNMDEAYRLTLQRAEPPNLKLKPRLSVQVYGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	1.7	0.9386
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	2.4	0.9338
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	3.0	0.9255
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	3.5	0.9022
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10004251 [exp]	3.7	0.8522
					Lus10010603 [exp]	4.9	0.8622
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	5.0	0.8754
AT5G45840			Leucine-rich repeat protein ki...		Lus10025400 [exp]	7.1	0.7634
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	7.5	0.8521
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	8.1	0.7956

Compare expression of checked genes

Lus10040525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.