Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 234 / 8e-75 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G36220 102 / 2e-25 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT3G26300 100 / 2e-24 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G06900 100 / 2e-24 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT3G26330 99 / 3e-24 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G48280 99 / 5e-24 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48320 99 / 6e-24 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT5G57260 97 / 1e-23 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT1G11610 95 / 8e-23 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2) AT2G30750 94 / 3e-22 CYP71A12 cytochrome P450, family 71, subfamily A, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021158 [exp] 352 / 5e-121 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 233 / 2e-74 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 127 / 2e-34 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 115 / 8e-30 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10012624 [exp] 113 / 3e-29 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Lus10005878 [exp] 105 / 3e-26 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10043308 [exp] 102 / 3e-25 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10021136 [exp] 101 / 6e-25 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10041951 [exp] 100 / 1e-24 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073300 [exp] 236 / 1e-75 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.009G069100 [exp] 169 / 5e-50 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G274600 [exp] 151 / 3e-43 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 133 / 1e-36 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 127 / 3e-34 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167800 [exp] 119 / 2e-31 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 116 / 2e-30 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G083000 [exp] 110 / 3e-28 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G083300 [exp] 110 / 3e-28 AT3G26330 363 / 7e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G084800 [exp] 110 / 3e-28 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10040526 pacid=23157639 polypeptide=Lus10040526 locus=Lus10040526.g ID=Lus10040526.BGIv1.0 annot-version=v1.0 ATGGCCTCCTGGACGGCGATCATCTCCGGCCTACTATTGGCCACCTTCATCTACTACCTCCTTGCCAACAGGTCCCGGAACTGGAAGGCTCTCCCACCGG GGCCAAACCCATGGCCGATCGTGGGTAACCTCCCCCATCTCGGTGCAGTCCCTCACCACTCCATCGCCGCCCTCGCTCGCAAGTACGGACCCCTCATGTA CCTACGGTTAGGGTTCGTGGACGTAGTAGTGGCCGCCTCCGCCTCCGTAGCCTCACAGTTCCTCAAGGTCCACGACGCCAACTTCTCCGACCGTCCGCCC ACATCAGGAGGGAAGTACATCGCCTACAACTATCAGGACATGGTGTTTGCCCCATACGGACCTCGGTGGAGGCTGCTCCCAAGAACGCAGGCACTAGCCA GTCTAGGAGACGCGCCAGTGATTATGGGACAATTCTTAAACCTCTGCACCACCAACGCGCTGGGGAGGGTGCTGGTGGGGAAGCGAGTGTTCGGTGACAT CACTGGAGGGGCAGATCCGAAGGCGGAGGACTTCAAATCCATGGTGGTGGAGCAAATGGTGCTCGCTGGCGTTTTCAATGTCGGTGATTTTGTCCCAGCT CTAGAATGGCTAGATTTATAG
AA sequence Show only first row Show all	>Lus10040526 pacid=23157639 polypeptide=Lus10040526 locus=Lus10040526.g ID=Lus10040526.BGIv1.0 annot-version=v1.0 MASWTAIISGLLLATFIYYLLANRSRNWKALPPGPNPWPIVGNLPHLGAVPHHSIAALARKYGPLMYLRLGFVDVVVAASASVASQFLKVHDANFSDRPP TSGGKYIAYNYQDMVFAPYGPRWRLLPRTQALASLGDAPVIMGQFLNLCTTNALGRVLVGKRVFGDITGGADPKAEDFKSMVVEQMVLAGVFNVGDFVPA LEWLDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	0	1
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	1.0	0.9477
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	1.4	0.9379
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10023670 [exp]	3.5	0.9352
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10030185 [exp]	4.4	0.8725
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	5.7	0.9142
AT1G17930			Aminotransferase-like, plant m...		Lus10011644 [exp]	6.2	0.9355
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10039768 [exp]	6.6	0.8459
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10007417 [exp]	7.1	0.7495
					Lus10010603 [exp]	7.9	0.8660
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011745 [exp]	8.4	0.9308

Compare expression of checked genes

Lus10040526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.