Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74310 903 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT5G15450 484 / 1e-161 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 474 / 1e-157 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT4G14670 393 / 4e-130 CLPB2 casein lytic proteinase B2 (.1) AT5G50920 354 / 6e-112 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 349 / 4e-110 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 319 / 1e-98 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT4G30350 71 / 1e-12 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 66 / 2e-11 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G57710 62 / 8e-10 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021159 [exp] 1033 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10040528 [exp] 1030 / 0 AT1G74310 1496 / 0.0 heat shock protein 101 (.1) Lus10030705 [exp] 466 / 1e-154 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 467 / 3e-154 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10041018 [exp] 456 / 2e-150 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10032544 [exp] 352 / 1e-113 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10013459 [exp] 357 / 5e-111 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10016723 [exp] 348 / 6e-110 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10036017 [exp] 347 / 2e-109 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057000 [exp] 959 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 956 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.004G124800 [exp] 487 / 2e-162 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 470 / 6e-156 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 455 / 4e-150 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.012G105900 [exp] 358 / 1e-113 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 358 / 2e-113 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 322 / 1e-99 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 316 / 2e-97 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.005G197400 [exp] 298 / 9e-95 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10040527 pacid=23157719 polypeptide=Lus10040527 locus=Lus10040527.g ID=Lus10040527.BGIv1.0 annot-version=v1.0 ATGAGGTGCTCAACAGGTCGTCATTTGCCAGATAAGGCTATCGATTTAGTGGACGAAGCATGTGCTAATGTCCGAGTTCAGCTGGATAGCCAGCCTGAAG AAATTGATAATCTTGAGAGGAAAAGGATCCAATTAGAGGTTGAACTCCATGCACTTGAGAAGGAGAAAGATAAAGCCAGTAAAGCTCGACTCACGGAGGT GGTGAAAGAGCTTGATGATTTGAGGGACAAACTCCAACCACTGATGATGAAGTACAAGAAGGAGAAAGAAAGGATTGATGAAATCCGCAGACTGAAGCAA AAGAGGGAGGAAATCCATTTCTCCATTCAAGAGGCCGAGAGGAGATATGATCTGGCCCGAGTTGCTGACTTGAAATATGGTGCATTGGAGGAGGTCGAGG CTGCCATAGCACGGCTTGAAGGAGGCACAACGGAAGGTAACTTGATGCTGACCGAAACAGTTGGTCCTGAACATATTGCTGAAGTTGTCAGCCGATGGAC CGGCATACCTGTCACGAGGCTTGGCCAGAACGACAAGGAACGGCTAATCGGGCTAGCAGACCGCTTGCATCAAAGAGTGGTTGGACAGAATGATGCTGTT GATGCTGTTGCTGAGGCTGTGTTGAGATCAAGGGCTGGCTTGGGAAGGCCTCAACAGCCTACCGGTTCATTCTTGTTCTTGGGTCCGACTGGTGTGGGGA AAACTGAACTCGCCAAGGCTCTTGCTGAGCAGCTATTCGATGATGAGAATCAGATGGTTCGGATCGATATGTCAGAGTACATGGAGCAGCATTCAGTGTC GAGGCTCATTGGTGCTCCTCCAGGCTATGTAGGACATGAGGAAGGCGGTCAACTGACAGAAGCTGTGAGGAGGCGGCCCTACAGTGTCATCCTCTTTGAT GAAGTTGAGAAAGCTCATGTTTCTGTGTTCAACACACTTCTTCAAGTCTTGGACGACGGGAGGCTGACCGATGGCCAAGGTCGGACGGTTGATTTCAGGA ACACAGTCATCATTATGACCTCCAATCTTGGTGCTGAGCATCTGCTGTCTGGTCTACTAGGTAAATGTCCGATGCAAGTTGCTAGGGACAAGGTTATGCA GGAGGTTAGGAAGCACTTCAGGCCAGAACTGCTGAACAGGTTGGATGAAGTGGTAGTTTTCGATCCTCTCTCGCATGACCAGTTGAGGAAAGTTGCTAGG CTGCAAATGAAAGACGTGGCTTTAAGGCTTGCAGAGCGGGGGATAGCAATAGGTGTAACTGATGCAGCCTTGGATCATGTGTTGGCAGAGAGCTATGACC CTGTTTATGGAGCACGTCCTATAAGGAGGTGGCTGGAGAAGAGGGTGGTAACAGAGCTATCAAGGATGTTGGTAAGAGAAGAGATTGATGAGAACTCAAC AGTTTACATAGATGCATCTGCCGACGGGAAGGGATTGGCTTACCGGGTGGAGAAGAATGGAGGTCTTGTGAATGCTTCGACTGGACGGAAAGGTGACATC CTGATAGAGGTTCCAAGTGGGAATGTTCCGAGGAATGAAGCTGCTCAGGCTGTGAAGAAGCTGAAGATAGAAGAGATTGTAGATGATGAAGATGAGGAGA TGGCGGACTAG
AA sequence Show only first row Show all	>Lus10040527 pacid=23157719 polypeptide=Lus10040527 locus=Lus10040527.g ID=Lus10040527.BGIv1.0 annot-version=v1.0 MRCSTGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALEKEKDKASKARLTEVVKELDDLRDKLQPLMMKYKKEKERIDEIRRLKQ KREEIHFSIQEAERRYDLARVADLKYGALEEVEAAIARLEGGTTEGNLMLTETVGPEHIAEVVSRWTGIPVTRLGQNDKERLIGLADRLHQRVVGQNDAV DAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENQMVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVILFD EVEKAHVSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLLGKCPMQVARDKVMQEVRKHFRPELLNRLDEVVVFDPLSHDQLRKVAR LQMKDVALRLAERGIAIGVTDAALDHVLAESYDPVYGARPIRRWLEKRVVTELSRMLVREEIDENSTVYIDASADGKGLAYRVEKNGGLVNASTGRKGDI LIEVPSGNVPRNEAAQAVKKLKIEEIVDDEDEEMAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	0	1
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	1.0	0.9975
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	2.0	0.9944
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031154 [exp]	2.2	0.9650
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10028919 [exp]	2.8	0.9590
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	2.8	0.9693
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021160 [exp]	3.0	0.9770
AT5G39570			unknown protein		Lus10016220 [exp]	4.2	0.9553
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10026453 [exp]	4.4	0.9311
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	4.6	0.9622
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10001568 [exp]	5.1	0.9477

Compare expression of checked genes

Lus10040527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.