Plant FIBer expression Database

Lus10040529 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61150 446 / 2e-149 VIP4 VERNALIZATION INDEPENDENCE 4, leo1-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021161
[exp]
894 / 0 AT5G61150 533 / 0.0 VERNALIZATION INDEPENDENCE 4, leo1-like family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G065600
[exp]
669 / 0 AT5G61150 444 / 4e-149 VERNALIZATION INDEPENDENCE 4, leo1-like family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04004 Leo1 Leo1-like protein
Representative CDS sequence
>Lus10040529 pacid=23157772 polypeptide=Lus10040529 locus=Lus10040529.g ID=Lus10040529.BGIv1.0 annot-version=v1.0
ATGGCGGGCGGAGAGAGGAGGCATGAGATGATGCAGAATTTATTCGGGTATCAATCGGAGGAAGAGGAAGAGATGGAGTCCGAGCACGAATCTAACCCTC
AGCCCAATTACGCTTCGGATGAAGCTGAGGGAGAACTGAGGAGTGCGATTGAGGATGTGGGTGAAGGTGAAGTAGAGGTGCAGGAAGATGTAGAAGTTGA
GAGTGAAGGTGATATGCGTGAGGTAGAGCCTGATCCTGGGGAAAGTGAGGGTGAAAGAGAGCCAAGTTCGCAGGAAGTTGATGTTGAGGATAATAGAGAA
GAAAGCGAGCCAAAAGATGCAGAAAGTGATGAGAAAGAAGAGTATGATGAGAGGGTTATCACCAGTAGAAGACGTGATGTGGTGGAAAGTGGATCAGAGA
GATTCGAGGAGCAACATTATGTTGACCATGACGATGAGGAAGTTGAGCAAGCTAGAAGCCCAAGTAGATCTCCTGTGGAGGAGAGGGACCAAACACACAT
CTCACATTCAGCTGCTGAGATACGTGATGTATTTGGCGATTCTGATGACGAGGAAGAGGCAGGATATGCTGTTCAAAATGACATTGCACCAGATAGTCAT
AGGTCTCCTTTAGAAGAGGAAGCGAGCTATGAGAAGAATCTAAGACCAGAAGACATGCTACCTGATGAAGATGCCCGATATGAATCAGAAGAGGAGAATT
TTGAGGTTAAGCAAAAAGAAAGGCCTGTTGGCCCCCCACTGGAGCTGGAGATTCCATTTCAAGCAGCTCCTGCCCTTCCATCTAGGATGAACTTGATCAA
AGTTTCCAACATAATGGGTATTGAGTCACAGCCATTTGATCCCAAGACATACGAGGAGGAGAGAACATTTGTCACTGATGATTCTGGAGCTCGTAAGCGC
ACACGTTTGGAAAATAACATTGTCCGCTGGCGACGTGTCAGAAATCCTGATGGTTCAACTTCTATTGAAAGTAATGCTCGCTTCGTCCGGTGGTCAGATG
GCAGTTTGCAGTTACAACTTGGAAATGAGGTTCTTGATATATCTGTACAGGATGCACAACACGAACAAAGTCACCTCTTTCTTAGGCATAATAAGGTTAT
TAATTATTACACTGTCTACTTATTGCACTCTCCATCTATAATTCAGTCTCTTCTTCAATCTCAAGGAAGAATCTTGAGGAAGATGAAGTTCATGCCATCA
TCTCTATCATCAAACTCGCACAGGCTGCTGACTGCCCTTGTCGACTCACGGCATAGGAAAGTTTACAAGGTCAAGAATTGCATTACTGACATTGACCCTG
AGAGAGAGAAGGAGGAGAAAGAGAGGGCTGAGAGTCAAACAATCAGAGCAAATGTACTTCTTAATCGTAAGAGGGAAAAGGTTACCCGGAAATATACACC
TGTAGTAGAGCGTAAGCATCAACTCTCAACTGGATTCTTGGAAGAAGCTCTCGACGAGGAGGATGAACAAGACTATTATGATACTCGTCGCTCTCGTCGC
CGGTTTGAGGAAGATCTAGAAGTGGAAGCTCGAGCAGAGAAGCGCATTATGAATGCTAAGAAGGGAAACAAAGACATCCTACGCAAATCATCTTTGCCCA
CAGCTAAATCAAGTAAGCGGCCCGTGAACTTCTCAGACAGTGAGAGAGGAGAATCTGAATATGAAAGTGACGAGTATCAAGATGAGAGGTCTCCTCGTAG
AAAGAGAGTAGAAGATCCGGAGGATGAGTATGAAGAAGATGAGGAGGAGGAAGAACAACAATATAATGAAGAGGCAGAAGCAGATGACATGTCAGAGGAA
GAAGCTGAGGAACCAAATCATAGAGGTAAAGGGAGATTGAGAAATGAGATTCAGTCGGATGAGGATTCCCCACCTAGGAGGATGCCAGCAGCCCACAGGA
GGAAAGCAGTAGTATTCGACAGTGATGACGAATGA
AA sequence
>Lus10040529 pacid=23157772 polypeptide=Lus10040529 locus=Lus10040529.g ID=Lus10040529.BGIv1.0 annot-version=v1.0
MAGGERRHEMMQNLFGYQSEEEEEMESEHESNPQPNYASDEAEGELRSAIEDVGEGEVEVQEDVEVESEGDMREVEPDPGESEGEREPSSQEVDVEDNRE
ESEPKDAESDEKEEYDERVITSRRRDVVESGSERFEEQHYVDHDDEEVEQARSPSRSPVEERDQTHISHSAAEIRDVFGDSDDEEEAGYAVQNDIAPDSH
RSPLEEEASYEKNLRPEDMLPDEDARYESEEENFEVKQKERPVGPPLELEIPFQAAPALPSRMNLIKVSNIMGIESQPFDPKTYEEERTFVTDDSGARKR
TRLENNIVRWRRVRNPDGSTSIESNARFVRWSDGSLQLQLGNEVLDISVQDAQHEQSHLFLRHNKVINYYTVYLLHSPSIIQSLLQSQGRILRKMKFMPS
SLSSNSHRLLTALVDSRHRKVYKVKNCITDIDPEREKEEKERAESQTIRANVLLNRKREKVTRKYTPVVERKHQLSTGFLEEALDEEDEQDYYDTRRSRR
RFEEDLEVEARAEKRIMNAKKGNKDILRKSSLPTAKSSKRPVNFSDSERGESEYESDEYQDERSPRRKRVEDPEDEYEEDEEEEEQQYNEEAEADDMSEE
EAEEPNHRGKGRLRNEIQSDEDSPPRRMPAAHRRKAVVFDSDDE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G61150 VIP4 VERNALIZATION INDEPENDENCE 4, ... Lus10040529
[exp]
0 1
AT5G61150 VIP4 VERNALIZATION INDEPENDENCE 4, ... Lus10021161
[exp]
1.7 0.8995
AT4G19110 Protein kinase superfamily pro... Lus10008303
[exp]
3.9 0.9138
AT1G60995 unknown protein Lus10014638
[exp]
7.2 0.9048
AT4G14340 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casei... Lus10021175
[exp]
9.2 0.8933
AT4G20300 Protein of unknown function (D... Lus10038379
[exp]
10.2 0.8784
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Lus10018596
[exp]
11.5 0.8873
AT4G19040 EDR2 ENHANCED DISEASE RESISTANCE 2 ... Lus10012149
[exp]
13.5 0.8792
AT3G14910 unknown protein Lus10043078
[exp]
19.6 0.8820
AT5G53530 VPS26A vacuolar protein sorting 26A (... Lus10008868
[exp]
22.2 0.8839
AT2G26000 BRIZ2 BRAP2 RING ZnF UBP domain-cont... Lus10035023
[exp]
23.0 0.8984

Lus10040529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.