Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18040 593 / 0 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G73690 571 / 0 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 542 / 0 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT3G48750 265 / 2e-86 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G76540 242 / 3e-77 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G67580 253 / 8e-77 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G20930 238 / 2e-75 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT5G63370 236 / 4e-73 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT2G38620 231 / 5e-73 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT5G10270 234 / 5e-72 CDKC;1 cyclin-dependent kinase C;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017371 [exp] 811 / 0 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10001184 [exp] 258 / 1e-84 AT1G18040 117 / 6e-31 cyclin-dependent kinase D1;3 (.1) Lus10036106 [exp] 242 / 7e-75 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10038755 [exp] 231 / 7e-74 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10026790 [exp] 239 / 8e-74 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10015816 [exp] 244 / 2e-73 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022043 [exp] 247 / 5e-73 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036995 [exp] 243 / 6e-73 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021611 [exp] 228 / 6e-72 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052100 [exp] 694 / 0 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.014G079100 [exp] 683 / 0 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.004G133500 [exp] 265 / 2e-86 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.002G003400 [exp] 241 / 1e-76 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.010G056900 [exp] 248 / 9e-75 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G257500 [exp] 234 / 2e-74 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.016G142800 [exp] 234 / 2e-74 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.006G024600 [exp] 240 / 5e-74 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.001G088000 [exp] 234 / 2e-72 AT5G63610 681 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.006G113200 [exp] 230 / 2e-72 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040530 pacid=23157874 polypeptide=Lus10040530 locus=Lus10040530.g ID=Lus10040530.BGIv1.0 annot-version=v1.0 ATGGCTGATAACAACCAGGAGAAGAAAGTGGCCGATAGGTATCTAAAGCGTGAAATTCTTGGCGAAGGCACCTATGGTGTCGTCTACAAGGCCATTGATA CCAGGACTGGACAGACGGTTGCAATTAAGAAAATTCGGCTTGGGAAGCACAAGGAAGGGGTGAATTTTACGGCTCTTAGAGAGATTAAATTGCTTAAAGA AATTAAAGATCCAAACATAATTGAATTGATTGATGCATTCCCTCACAAGGGGAACTTAAACCTTGTGTTTGAGTTTATGGAGACCGATCTCGAAGCAGTT ATTCGAGACAGAAACATATTTCTCTCACCAGCTGATATCAAATCATACTTTCAAATGACACTGAAAGGTCTAGCCATTTGCCACAAGAAATGGGTTTTGC ATAGGGACATGAAGCCAAACAATTTGTTGATAGGATCTAATGGACAGCTTAAACTGGCAGATTTTGGTTTAGCTCGCGTATTTGGAAGCCCAAATCGCAA GTTCACTCATCAAGTGTTTGCTCGATGGTACAGAGCACCTGAACTGTTATTTGGGGCAAAGCAGTATGGTGCCGGTGTTGATGTGTGGGCGGCAGCCTGC ATATTTGCCGAACTTCTCCTCCGCCGACCATTTCTGCAGGGATCAAGTGACATTGATCAACTCGGGAAGATTTTTCAAGCATTTGGGACTCCGACACCTT CTCAATGGCATGATTTGGTTTACCTTCCTGATTACGTGGAGTACCAAACAGTTCCTCAGCAACCTTTGCGAAAGTTATTTCCAATGGCTAGTGAGGATGC ACTGGATCTGTTATCAAAGATGTTCACTTACGACCCAAACGCTAGGATTTCAGTCCAACAGGCGTTGGAGCACAGGTACTTTTCTTCTGCCCCTTTATCT ACAGAGCCAGTTAAGCTTCCTAGACCAGCTCCAAAGGGACAATCTCTCAATACTAGGGTTTCAGATTTGAATTCCCAGGATGGTCCAACTGTGTTATCAC CTCCAAGGAAAACAAGAAGAGTGATGTCTGAACGCGAAAGCTTTGATGTAAATGCTAACCATCTTGATAAGATTGATGAACATGAGGAAATCAGGCAGAT AACTGGCGAGACTTCGGGCAGGAATGACCACTTGCCAATGTCGGTAGATCTTTCAGTCTTTGGAATCAGGCCTGTGAGCAGACCTACGATTAACAGTGCC GACAGAACTCATCTAAAGAGGAAACTCGATCTTGAATTCCAGTAG
AA sequence Show only first row Show all	>Lus10040530 pacid=23157874 polypeptide=Lus10040530 locus=Lus10040530.g ID=Lus10040530.BGIv1.0 annot-version=v1.0 MADNNQEKKVADRYLKREILGEGTYGVVYKAIDTRTGQTVAIKKIRLGKHKEGVNFTALREIKLLKEIKDPNIIELIDAFPHKGNLNLVFEFMETDLEAV IRDRNIFLSPADIKSYFQMTLKGLAICHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPNRKFTHQVFARWYRAPELLFGAKQYGAGVDVWAAAC IFAELLLRRPFLQGSSDIDQLGKIFQAFGTPTPSQWHDLVYLPDYVEYQTVPQQPLRKLFPMASEDALDLLSKMFTYDPNARISVQQALEHRYFSSAPLS TEPVKLPRPAPKGQSLNTRVSDLNSQDGPTVLSPPRKTRRVMSERESFDVNANHLDKIDEHEEIRQITGETSGRNDHLPMSVDLSVFGIRPVSRPTINSA DRTHLKRKLDLEFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10040530 [exp]	0	1
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	5.4	0.7971
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	12.6	0.7835
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10014622 [exp]	13.4	0.7689
AT3G45400			exostosin family protein (.1)		Lus10003870 [exp]	20.2	0.7023
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	20.6	0.7517
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10003973 [exp]	22.8	0.7411
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	23.4	0.7452
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	24.5	0.7183
AT3G19780			unknown protein		Lus10040970 [exp]	29.5	0.7301
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	33.5	0.6863

Compare expression of checked genes

Lus10040530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.